Absorption spectra protein

The molecular weight of 320,000 obtained for the muscle enzyme from sedimentation-diffusion data at 2-6 mg/ml and v = 0.75 (132) is to be compared with 270,000 obtained by Wolfenden et al. from s20,w = 11.1 S and D2 ,w = 3.75 X 10 7 cm2 sec1, and v = 0.731 calculated from the amino acid content (92). The rabbit muscle enzyme has a normal amino acid content, that is, no unusually low or large amount of a particular amino acid was found. Of the 32 cysteine/half-cystine residues per mole based on a molecular weight of 270,000, 6.2 were rapidly titrated with p-mercuribenzoate (92). Typical protein absorption spectra were reported for elasmobranch fish (126), carp (125), rat (127), and rabbit muscle enzyme (68). An E m at 280 nm = 9.13 has been reported for the rabbit muscle enzyme (133). The atypical absorption spectrum with a maximum at 275-276 nm observed by Lee (132) is indicative of contaminating bound nucleotides. 

Muller et al.understand better the role of tyrosine in the structure and biological function of MDH. Resolution of the protein absorption spectrum, using iV-acetylphenylalanine ethyl ester in dioxane and A-acetyltyrosine ethyl ester in dioxane or 0.1 M phosphate buffer to model the effect of the local environments of the chromophoric groups, indicated that both the pig and the... 

Dissolve in the new sample cuvette small quantity of lyophilized a i -acid glycoprotein. Plot protein absorption spectrum from 200 to 400 nm. 

In an independent titration, titrate the buffer with the DnaB protein solution and determine the contribution of the protein fluorescence to the observed fluorescence of the eADP sample for each titration point. At high protein concentrations such a contribution will become signiflcant, in spite of the fact that the excitation is set at 325 nm (far from the protein absorption spectrum), due to the impurities in the protein sample and the discrete band pass of the excitation and emission monochromator. This is your background, 6. 

Molecular weight. The molecular weight of C. hilgendorfii luciferase reported in the past varies considerably across a range of 50,000-80,000 (Chase and Langridge, 1960 Shimomura etal., 1961, 1969 Tsuji and Sowinski, 1961 Tsuji et al., 1974) it appears most likely to be 60,000-70,000. The luciferase is an acidic protein with an isoelectric point of 4.35 (Shimomura et al., 1961). The absorption spectrum of luciferase is that of a simple protein without any prosthetic group, showing a peak at 280 nm. Absorbance value at 280 nm of a 0.1% luciferase solution is approximately 0.96 (Shimomura etal., 1969). 

Spectral properties. The purified photoprotein is practically colorless, although its absorption spectrum (Fig. 7.1.4) shows a very slight absorption in the region of 330-380nm in addition to the 280 nm protein peak. The solution of photoprotein is moderately blue fluorescent, with an emission maximum at 453-455 nm and an... 

The absorption spectrum of the photoprotein showed a small peak (Xmax 423 nm, with a shoulder at about 450 nm) in addition to the protein peak at 280nm (Fig. 10.1.2). The peak at 423nm decreased slightly upon the FI202-triggered luminescence reaction. The photoprotein is fluorescent in greenish-blue (emission A.max 482 nm), which coincides exactly with the luminescence spectrum of the photoprotein... 

The photoprotein is non-fluorescent. The absorption spectrum of purified photoprotein shows a very small peak at 410 nm, in addition to the protein peak at 280 nm (Fig. 10.2.5). The peak height at 410 nm appears to be proportional to the luminescence activity of the protein. The protein also shows extremely weak absorption peaks at about 497, 550 and 587nm (not shown). These absorption peaks, except the 280 nm peak, might be due to the presence of a chromophore that is functional in the light emission. 

Campbell and Herring (1987) isolated and partially purified a red fluorescent protein from the suborbital light organs of M. niger. The absorption spectrum of this red fluorescent protein had a peak at 612 nm, a shoulder at 555 nm, and a secondary peak at 490 nm. 

D. gigas AOR was the first Mo-pterin-containing protein whose 3D structure was solved. From D. desulfuricans, a homologous AOR (MOD) was purified, characterized, and crystallized. Both proteins are homodimers with-100 kDa subunits and contain one Mo-pterin site (MCD-cofactor) and two [2Fe-2S] clusters. Flavin moieties are not found. The visible absorption spectrum of the proteins (absorption wavelengths, extinction coefficients, and optical ratios at characteristic wavelengths) are similar to those observed for the deflavo-forms of... 

Fluorescent probes are divided in two categories, i.e., intrinsic and extrinsic probes. Tryptophan is the most widely used intrinsic probe. The absorption spectrum, centered at 280 nm, displays two overlapping absorbance transitions. In contrast, the fluorescence emission spectrum is broad and is characterized by a large Stokes shift, which varies with the polarity of the environment. The fluorescence emission peak is at about 350 nm in water but the peak shifts to about 315 nm in nonpolar media, such as within the hydrophobic core of folded proteins. Vitamin A, located in milk fat globules, may be used as an intrinsic probe to follow, for example, the changes of triglyceride physical state as a function of temperature [20]. Extrinsic probes are used to characterize molecular events when intrinsic fluorophores are absent or are so numerous that the interpretation of the data becomes ambiguous. Extrinsic probes may also be used to obtain additional or complementary information from a specific macromolecular domain or from an oil water interface. 

The core of the iron storage protein ferritin consists of a hydrated ferric oxide-phosphate complex. Various models have been proposed which feature Fe111 06 oct., Fe111 O4 tet. or Fe111 O4 tet. Fe111 06 oct. complexing the first listed is preferred by Gray (99) on the basis of the electronic absorption spectrum. The protein very closely related to ferritin which occurs in the mold Phycomyces blakesleeanus contains... 

Voityuk AA, MichelBeyerle ME, Rosch N (1997) Protonation effects on the chromophore of green fluorescent protein. Quantum chemical study of the absorption spectrum. Chem Phys... 

The biochemical activity and accessibility of biomolecule-intercalated AMP clays to small molecules was retained in the hybrid nanocomposites. For example, the absorption spectrum of the intercalated Mb-AMP nanocomposite showed a characteristic soret band at 408 nm associated with the intact prosthetic heme group of the oxidised protein (Fe(III), met-myoglobin) (Figure 8.9). Treatment of Mb with sodium dithionite solution resulted in a red shift of the soret band from 408 to 427 nm, consistent with the formation of intercalated deoxy-Mb. Reversible binding of CO under argon to the deoxy-Mb-AMP lamellar nanocomposite was demonstrated by a shift in the soret band from 427 to 422 nm. Subsequent dissociation of CO from the heme centre due to competitive 02 binding shifted the soret band to 416nm on formation of intercalated oxy-Mb. 

Myoglobin can also bind CO, and sol-gel with entrapped myoglobin can be used as the sensor for CO by taking advantages of the changes in the absorption spectrum due to protein-CO interaction. 

The most common methods used to determine protein concentration are the dye-binding procedure using Coomassie brilliant blue, and the bicinchonic-acid-based procedure. Various dyes are known to bind quantitatively to proteins, resulting in an alteration of the characteristic absorption spectrum of the dye. Coomassie brilliant blue G-250, for example, becomes protonated when dissolved in phosphoric acid, and has an absorbance maximum at 450 nm. Binding of the dye to a protein (via ionic interactions) results in a shift in the dye s absorbance spectrum, with a new major peak (at 595 nm) being observed. Quantification of proteins in this case can thus be undertaken by measuring absorbance at 595 nm. The method is sensitive, easy and rapid to undertake. Also, it exhibits little quantitative variation between different proteins. 

Type I copper enzymes are called blue proteins because of their intense absorbance (s 3000 M-1 cm- ) in the electronic absorption spectrum around... 

The structure of HRP-I has been identified as an Fe(IV) porphyrin -ir-cation radical by a variety of spectroscopic methods (71-74). The oxidized forms of HRP present differences in their visible absorption spectra (75-77). These distinct spectral characteristics of HRP have made this a very useful redox protein for studying one-electron transfers in alkaloid reactions. An example is illustrated in Fig. 2 where the one-electron oxidation of vindoline is followed by observing the oxidation of native HRP (curve A) with equimolar H202 to HRP-compound I (curve B). Addition of vindoline to the reaction mixture yields the absorption spectrum of HRP-compound II (curve C) (78). This methodology can yield useful information on the stoichiometry and kinetics of electron transfer from an alkaloid substrate to HRP. Several excellent reviews on the properties, mechanism, and oxidation states of peroxidases have been published (79-81). 

Figure 6.4 Absorption spectrum (A) and CD spectrum (B) of the [Fe4S4] cluster of a high-potential iron protein (HiPIP) from Chromatium sp. (From Cowan, 1997. Reproduced with permission from John Wiley Sons., Inc.)...

In colour vision there are three specific types of cone cell corresponding to red, green and blue receptors. The chromophore is the same for all three colours, being 11-cis-retinal bound to a protein which is structurally similar to opsin. Colour selectivity is achieved by positioning specific amino acid side chains along the chromophore so as to perturb the absorption spectrum of the chromophore. 

Figure 11.10 Absorption spectrum of the protein-copper complex of the biuret reaction.

Figure 11.11 Absorption spectrum of the protein-Coomassie brilliant blue G 250 complex A, Coomassie brilliant blue only B, protein-dye complex.

Figure 2.11. The dependence of the position of the fluorescence spectrum maximum on excitation wavelength for tryptophan in a model medium (glycerol) at different temperatures (a) and singletryptophan proteins (b). 1, Whiting parvalbumin, pH 6.S in the presence of Ca2+ ions 2, ribonuclease Th pH 6.5 3, ribonuclease C2, pH 6.5 4, human serum albumin, pH 7.0, +10"4 M sodium dodecyl sulfate 5, human serum albumin, pH 3.2 6, melittin, pH 7.5, +0.15 M NaCl 7, protease inhibitor IT-AJ from Actinomyces janthinus, pH 2.9 8, human serum albumin, pH 7.0 9, -casein, pH 7.5 10, protease inhibitor IT-AJ, pH 7.0 11, basic myelin protein, pH 7.0 12, melittin in water. The dashed line is the absorption spectrum of tryptophan.

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