Phenolic peptide

S -(4-Hydroxybenzyl)-glutathione (phenolic peptide) i.-a-Amino-y-oxalylaminobutyric acid (amino acid) I.-3-Oxalylamino-2-aminopropionic acid (= 3-JVOxalyl-2,3-diamino propionic acid (3-ODAP (3-Ar-Oxalylamino-L-alanine I.-BOAA)... 

Actual droplet formation is not necessary as long as the mobile phase can pass through the stationary phase without displacing it. As a matter of fact, both aqueous and nonaqueous biphasic systems have been used (51, 332). Recent results reveal that a variety of natural products such as saponins, saturated fatty acids, and biomacromolecules - the latter on a biphasic aqueous polymer system - can be separated (332). Because of its comparatively rapid and non-destructive action, CPC has recently been used in the isolation of the tunichromes, the rather sensitive phenolic peptides from the vanadium-collecting sea squirt Ascidia nigra (53, 54) and of W-cis- and trans-rciindA from a complex photoisomerization mixture (51). 

The phenolic hydroxyl group of tyrosine, the imidazole moiety of histidine, and the amide groups of asparagine and glutamine are often not protected in peptide synthesis, since it is usually unnecessary. The protection of the hydroxyl group in serine and threonine (O-acetylation or O-benzylation) is not needed in the azide condensation procedure but may become important when other activation methods are used. 

This reaction sequence is much less prone to difficulties with isomerizations since the pyridine-like carbons of dipyrromethenes do not add protons. Yields are often low, however, since the intermediates do not survive the high temperatures. The more reactive, faster but less reliable system is certainly provided by the dipyrromethanes, in which the reactivity of the pyrrole units is comparable to activated benzene derivatives such as phenol or aniline. The situation is comparable with that found in peptide synthesis where the slow azide method gives cleaner products than the fast DCC-promoted condensations (see p. 234). 

Benzyl carbamates are readily cleaved under strongly acidic conditions HBr, AcOH 50% CF3COOH (25°, 14 days, partially cleaved) - 70% HF, pyridine CF3S03H FSOaH, or CHjSO.H.- In cleaving benzyl carbamates from peptides, 0.5 M 4-(methylmercapto)phenol in CF3CO2H has been recommended to suppress Bn additions to aromatic amino acids. To achieve deprotection via an Sn2 mechanism that also reduces the problem of Bn addition, HF-Me2S-p-cresol (25 65 10, v/v) has been recommended for peptide deprotection. 

An isopropyl ether was developed as a phenol protective group that would be more stable to Lewis acids than would be an aryl benzyl ether. The isopropyl group has been tested for use in the protection of the phenolic oxygen of tyrosine during peptide synthesis."... 

Cleavage is effected with acid. The following table compares the acidolysis rates with Bn and cyclohexyl esters in TFA/phenol at 43°. The Dmp group reduces aspartimide formation during Fmoc-based peptide synthesis. 

The Phacm group is stable to the following conditions DIEA-CH2CI2, TFA-CH2CI2, piperidine-DMF, 0.1 M TBAF-DMF, and DBU-DMF for 24 h at It to HF-anisole or / -cresol (9 1) at 0° for 1 h and to TFA-scavengers (phenol, HSCH2CH2SH, p-cresol, anisole) for 2 h at 25°. It is partially stable (>80%) to TFMSA-TFA-/ -cresol for 2 h at 25°. These stability characteristics make the group compatible with BOC- or Fmoc-based peptide synthesis. ... 

It is generally believed that the absorption (and fluorescence excitation) peak at about 400 nm is caused by the neutral form of the chro-mophore, 5-(p-hydroxybenzylidene)imidazolin-4-one, and the one in the 450-500 nm region by the phenol anion of the chromophore that can resonate with the quinoid form, as shown below (R1 and R2 represent peptide chains). However, the emission of light takes place always from the excited anionic form, even if the excitation is done with the neutral form chromophore. This must be due to the protein environment that facilitates the ionization of the phenol group of the chromophore. This is also consistent with the fact that the pACa values of phenols in excited state are in an acidic range, between 3 and 5 (Becker, 1969), thus favoring anionic forms at neutral pH. 

Activated esters for use in peptide-coupling reactions were produced by photolysis of optically active chromium aminocarbenes with alcohols which are good leaving groups, such as phenol, pentafluorophenol, 2,4,5-trichlorophenol, and N-hydroxysuccinimide (Table 17) [ 109]. Since arylcarbenes bearing the op-... 

Besides their interesting color application values, betalainic plants are also worthwhile from a nutritional standpoint. Research on this topic has recently been resumed with great scientific vigor in both in vitro and in vivo studies on red beets, amaranth, red-colored Swiss chard, red-violet pitahayas, and especially cactus pears. ° In the future, betalainic color crops will be benchmarked because of their pigment structure and quantity and also because of the individual and synergistic activities of their components such as colorless phenolics, amino compounds, peptides, proteins, and hydrocolloids. 

A second strategy is to attach a linker (also referred to as a handle or anchor) to the resin followed by assembly of the molecule. A linker is bifunctional spacer that serves to link the initial synthetic unit to the support in two discrete steps (Fig. 3). To attach a linker to a chloromethyl-PS resin, a phenol functionality such as handle 4 is used to form an ether bond (Fig. 4). To attach the same handle to an amino-functionalized support, acetoxy function 5 or a longer methylene spacer of the corresponding phenol is applied to form an amide bond. Both of these resins perform similarly and only differ in their initial starting resin [4], An alternative approach is to prepare a preformed handle in which the first building block is prederivatized to the linker and this moiety is attached to the resin. For peptide synthesis, this practice is common for the preparation of C-terminal peptide acids in order to reduce the amount of racemization of the a-carbon at the anchoring position [5],... 

Nitrophenyl esters of amino acids, which are important for peptide syntheses, have been obtained in a one-pot reaction from TV-protected amino acids, CDI, and /j-nitro-phenol at room temperature however, better yields of these esters could be achieved by use of TV-trifluoroacetylimidazole. In this reaction a mixed anhydride is presumably formed as an intermediate, which then acylates the alcohol component [17]... 

Polar organic compounds such as amino acids normally do not polymerize in water because of dipole-dipole interactions. However, polymerization of amino acids to peptides may occur on clay surfaces. For example, Degens and Metheja51 found kaolinite to serve as a catalyst for the polymerization of amino acids to peptides. In natural systems, Cu2+ is not very likely to exist in significant concentrations. However, Fe3+ may be present in the deep-well environment in sufficient amounts to enhance the adsorption of phenol, benzene, and related aromatics. Wastes from resinmanufacturing facilities, food-processing plants, pharmaceutical plants, and other types of chemical plants occasionally contain resin-like materials that may polymerize to form solids at deep-well-injection pressures and temperatures. 

Ni(salen)-DNA adduct formation is closely related to that formed by the Ni(peptide) systems, although there are different mechanisms proposed for both types of complexes. In the case of Ni(salen), the addition of a phenol radical to the guanine heterocycle and formation of a covalent bond to guanine C8 (Equation (9)) is suggested. 

Some non-silica sol-gel materials have also been developed to immobilize bioactive molecules for the construction of biosensors and to synthesize new catalysts for the functional devices. Liu et al. [33] proved that alumina sol-gel was a suitable matrix to improve the immobilization of tyrosinase for detection of trace phenols. Titania is another kind of non-silica material easily obtained from the sol-gel process [34, 35], Luckarift et al. [36] introduced a new method for enzyme immobilization in a bio-mimetic silica support. In this biosilicification process precipitation was catalyzed by the R5 peptide, the repeat unit of the silaffin, which was identified from the diatom Cylindrotheca fusiformis. During the enzyme immobilization in biosilicification the reaction mixture consisted of silicic acid (hydrolyzed tetramethyl orthosilicate) and R5 peptide and enzyme. In the process of precipitation the reaction enzyme was entrapped and nm-sized biosilica-immobilized spheres were formed. Carturan et al. [11] developed a biosil method for the encapsulation of plant and animal cells. 

In Goiffon s method (G3) peptides are precipitated with phospho-tungstic acid from a trichloroacetic acid filtrate. The precipitate is dissolved and color is developed by a reaction with Folins phenol reagent. This method, however, is not only specific for peptides and a separate assay of uric acid has to be made since this substance also reacts with Folin s reagent. 

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