Molecular orbital methods MINDO method

Geometric Optimization. The structure of the molecule as built by CHEMLAB (or a input from other methods) can be optimized through either a full force field molecular mechanics calculation (MMII) or with the semi-empirical molecular orbital methods MINDO-3 and MNDO. 

The semi-empirical molecular orbital method MINDO/3 has been used to calculate transition state geometries for the following decompositions. 

Several different molecular orbital methods have been used in SAR investigations. These include simple Huckel theory, HT,(38) extended Huckel theory, EHT,(39) CND0,( ) NDD0,(41) MINDO/3,(42) and PCILO,(43)... 

Lewis, D.F.V., Ioannides, C., and Parke, D.V., Prediction of chemical carcinogenicity from molecular structure a comparison of MINDO/3 and CNDO/2 molecular orbital methods, Toxicol. Lett., 45, 1-13, 1989. 

Preferred geometry of the benzene oxide-oxepin system can be predicted by molecular orbital methods. Thus benzene oxide la is predicted to be markedly non-planar (with the epoxide ring at an angle of 73° to the benzene ring), while the oxepin lb has been predicted to prefer a shallow boat structure (MINDO/3) or a planar structure ab initio) As previously mentioned, the proportion of each tautomer present at equilibrium is both temperature and solvent-dependent. Molecular orbital calculations have been used to rationalize the solvent effects, both in terms of the more polar character of the arene oxide that is favored in polar solvents and the strengthening of the oxirane C-C bond upon coordination of the oxygen atom lone pair in polar solvents. Thus values in the range 1.5-2.0 D and 0.76-1.36 D for the dipole moments of arene oxide la and oxepin lb have been calculated. 

Besides these theories, which are applicable to general systems, some other theories of less general applicability have been proposed. These are outlined separately below. A group of empirical methods which has been omitted from the present review are the semi-empirical molecular orbital methods known by acronyms such as MINDO, INDO and CNDO. The reader is referred to a book by Murrell and Harget259 for a description of these methods and to articles by Chutjian and Segal260 and by MacGregor and Berry261 for examples of their use. 

While ab initio calculations of reaction paths for polyvalent atoms are still scarce, the usefulness of semiempirical calculations has recendy been demonstrated. Dewar employed his MINDO/2 molecular orbital method to examine the addition of carbon atoms to ethylene and trans-2-butene (75). An unrealistically large activation energy was foimd for rearrangement of the intermediate cyclopropylidene to allene. 

Both 1,5-dithionane (27) and 1,4,7-trithionane (28) have been studied by extended Huckel, MINDO/3 and SCF-CNDO/2 molecular orbital methods, as well as by molecular mechanics... 

EHT, extended Huckel theory CNDO, complete neglect of differential overlap INDO, intermediate neglect of differential overlap NNDO, neglect of diatomic differential overlap SCF, self-consistent field MINDO, modified INDO ab initio, without the use of independently derived parameters. For an independent assessment of the different molecular orbital methods applied to carbocations, see Ref. 3. 

An alternative strategy was to develop methods wherein the two-electron integrals are parameterized to reproduce experimental heats of formation. As such, these are semi-empirical molecular orbital methods—they make use of experimental data. Beginning first with modified INDO (MINDO/1, MlNDO/2, and MINDO/3, early methods that are now little used), the methodological development moved on to modified neglect of diatomic differential overlap (MNDO). A second MNDO parameterization was created by Dewar and termed Austin method 1 (AMI), and finally, an "optimized" parametrization termed PM3 (for MNDO, parametric method 3) was formulated. These methods include very efficient and fairly accurate geometry optimization. The results they produce are in many respects comparable to low-level ab initio calculations (such as HF and STO-3G), but the calculations are much less expensive. 

HyperChem currently supports one first-principle method ab initio theory), one independent-electron method (extended Hiickel theory), and eight semi-empirical SCFmethods (CNDO, INDO, MINDO/3, MNDO, AMI, PM3, ZINDO/1, and ZINDO/S). This section gives sufficient details on each method to serve as an introduction to approximate molecular orbital calculations. For further details, the original papers on each method should be consulted, as well as other research literature. References appear in the following sections. 

The semiempirical molecular orbital (MO) methods of quantum chemistry [1-12] are widely used in computational studies of large molecules. A number of such methods are available for calculating thermochemical properties of ground state molecules in the gas phase, including MNDO [13], MNDOC [14], MNDO/d [15-18], AMI [19], PM3 [20], SAMI [21,22], OM1 [23], OM2 [24,25] MINDO/3 [26], SINDOl [27,28], and MSINDO [29-31]. MNDO, AMI, and PM3 are widely distributed in a number of software packages, and they are probably the most popular semiempirical methods for thermochemical calculations. We shall therefore concentrate on these methods, but shall also address other NDDO-based approaches with orthogonalization corrections [23-25],... 

Microwave spectrometer, 219-221 Microwave spectroscopy, 130, 219-231 compilations of results of, 231 dipole-moment measurements in, 225 experimental procedures in, 219-221 frequency measurements in, 220 and molecular structure, 221-225 and rotational barriers, 226-228 and vibrational frequencies, 225-226 Mid infrared, 261 MINDO method, 71,76 and force constants, 245 and ionization potentials, 318-319 Minimal basis set, 65 Minor, 14 Modal matrix, 106 Molecular orbitals for diatomics, 58 and group theory, 418-427 for polyatomics, 66... 

Hiickel and extended Huckel methods are termed semi-empirical because they rely on experimental data for the quantification of parameters. There are other semi-empirical methods, such as CNDO, MINDO, INDO, in which experimental data are still used, but more care is taken in evaluating the Htj. These methods are self-consistent field procedures based on 3 SCF. They are discussed in various works on molecular orbital theory.4... 

Semiempirical molecular orbital methods23-25 incorporate parameters derived from experimental data into molecular orbital theory to reduce the time-consuming calculation of two-electron integrals and correlation effects. Examples of semiempirical molecular orbital methods include Dewar s AMI, MNDO, and MINDO/3. Of the three quantum chemical types, the semiempirical molecular orbital methods are the least sophisticated and thus require the least amount of computational resources. However, these methods can be reasonably accurate for molecules with standard bond types. 

It has been customary to classify methods by the nature of the approximations made. In this sense CNDO, INDO (or MINDO), and NDDO (Neglect of Diatomic Differential Overlap) form a natural progression in which the neglect of differential overlap is applied less and less fully. It is now clearer that there is a deeper division between methods, related to their objectives. On the one hand are approximate methods which set out to mimic the ab initio molecular orbital results. The objective here is simply to find a more economical method. On the other hand, some workers, recognizing the defects of the MO scheme, aim to produce more accurate results by the extensive use of parameters obtained from experimental data. This latter approach appears to be theoretically unsound since the formalism of the single-determinant wavefunction and the Hartree-Fock equations is retained. It can be argued that the use of the single-determinant wavefunction prevents the consistent achievement of predictions better than those obtained by the ab initio scheme where no further... 

There have been several molecular orbital treatments of the structure and reactivity of oxazole these are summarized by Turchi and Dewar (75CRV389). Table 1 lists the a, it and net charge distributions calculated by the all-valence ab initio method, the net charges obtained by the MINDO/3 method and the bond lengths calculated by the latter method. 

Molecular orbital theory has been applied to the problem of cyclohexane conformations by Dewar and SchoUer.32) Preliminary results using the MINDO/2 method predict a barrier considerably lower than found experimentally. 

Tel. 913-268-3271, fax 913-268-3445, e-mail aholder vaxl.umkc.edu Semiempirical molecular orbital calculations with M. J. S. Dewar s SAMI parameterization, including d orbitals for transition metals, and a graphical user interface. MINDO/3, MNDO, MNDOC, AMI, and PM3 methods. DEC, Cray, Silicon Graphics, Sun, and PCs (under X-Windows). 

The MOPAC (molecular orbital package), which has been explored by Dr. James J.P. Stewart, is the method by which the electron characteristics of a molecule is calculated. The MOPAC determines both an optimum geometry and the electron properties of molecule by solving the Schrodinger equation, using the MINDO/3 [6], MNDO [7], or AMI [8] semi-empirical Hamiltonians developed by M.J.S. Dewar, the MIND-d Hamiltonian developed by W. Thiel, or the PM3 [9] or PM5 semi-empirical Hamiltonians developed by J.J.P. Stewart. 

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