Infrared amides

Reisdorf WC, Krimm S. Infrared amide I band of the coiled coil. Biochemistry 1996 35 1383-1386. 

In the case of sugars, which are largely employed in the pharmaceutical field as lyoprotectants for the formulation of proteins used as drugs, it was found that FT-IR spectra of lipase BC co-lyophilized with these additives are more similar to that of lipase BC lyophilized without sugars than to that of the enzyme in water (the comparison of spectra was done on the basis of correlation coefficients between the infrared amide I band) [14]. An analysis of the relative area of the... 

Table 7.2 Characteristic infrared amide bands of proteins. From Stuart, B., Biological Applications of Infrared Spectroscopy, ACOL Series, Wiley, Chichester, UK, 1997. University of Greenwich, and reproduced by permission of the University of Greenwich...

Brauner, J.W., Dugan, C., Mendelsohn, R. C labeling of hydrophobic peptides. Origin of the anomalous intensity distribution in the infrared amide I spectral region of b-sheet structures. J. Am. Chem. Soc. 122, 677-683 (2000)... 

Hamm P, Urn M and Hochstrasser R M 1998 Structure of the amide I band of peptides measured by femtosecond nonlinear-infrared spectroscopy J. Phys. Chem. B 102 6123-38... 

Scheme 30) (6). Infrared spectra of the products possess a normal amide carbonyl absorption, indicating that the products are not present on the dipolar form (30) but rather as the neutral A -thiazoline tautomer (31 or 32) (6). 

Section 20 21 Acyl chlorides anhydrides esters and amides all show a strong band for C=0 stretching m the infrared The range extends from about 1820 cm (acyl chlorides) to 1690 cm (amides) Their NMR spectra are characterized by a peak near 8 180 for the carbonyl carbon H NMR spectroscopy is useful for distinguishing between the groups R and R m esters (RCO2R ) The protons on the carbon bonded to O m R appear at lower field (less shielded) than those on the carbon bonded to C=0... 

Amides can be titrated direcdy by perchloric acid ia a nonaqueous solvent (60,61) and by potentiometric titration (62), which gives the sum of amide and amine salts. Infrared spectroscopy has been used to characterize fatty acid amides (63). Mass spectroscopy has been able to iadicate the position of the unsaturation ia unsaturated fatty amides (64). Typical specifications of some primary fatty acid amides and properties of bisamides are shown ia Tables 5 and 6. 

Instmmental methods of analysis provide information about the specific composition and purity of the amines. QuaUtative information about the identity of the product (functional groups present) and quantitative analysis (amount of various components such as nitrile, amide, acid, and deterruination of unsaturation) can be obtained by infrared analysis. Gas chromatography (gc), with a Hquid phase of either Apiezon grease or Carbowax, and high performance Hquid chromatography (hplc), using siHca columns and solvent systems such as isooctane, methyl tert-huty ether, tetrahydrofuran, and methanol, are used for quantitative analysis of fatty amine mixtures. Nuclear magnetic resonance spectroscopy (nmr), both proton ( H) and carbon-13 ( C), which can be used for quaHtative and quantitative analysis, is an important method used to analyze fatty amines (8,81). 

The present authors have found that the preparation of 7V-acetyl aziridine derivates provides the most secure method of differentiating aziridines from primary amines which are alternate reaction products in a number of cases. The infrared spectra of the former derivatives show only a peak at 1690 cm" for a tertiary amide peaks at ca. 3440 and 1530 cm" indicative of a secondary amide are absent. Acetylation also shifts the aziridine ring protons to a lower field in the NMR by ca. 1 ppm relative to the parent aziridine. The A"-acetyl aziridines are hydrolyzed with 3% methanolic potassium hydroxide. " Published NMR spectra of several 16j5,17j -aziridines reveal resonance patterns resembling those of the respective epoxides. " ... 

Ultraviolet absorptions ofvinylogous lactams were found by MOLCAO calculations and compared with experimental values (663). Infrared spectroscopic studies of vinylogous amides (664) and some fifty vinylogous urethanes (665) allowed configurational and structural assignments. The effect of enamine-imine equilibrium in a series of benzophenone derivatives was established (666) and the effect of structure on enamine basicity studied (667). 

The whole concept of direct methylation has recently been critically reviewed and rejected by Gompper as a method to study tautomerism. The difference in the proportions of the two methyl derivatives produced w hen diazomethane is in excess, or the reverse, has now been ascribed to the relative importance of the Sn and Sn reactions of the tautomeric compound with diazomethane. The proportions of N- and 0-methyl derivatives formed by the reaction of cyclic amides with diazomethane has been related to the infrared vC—O frequencies. ... 

Although these reactions suggest the possibility of a tautomeric equilibrium between the amide and imidol forms in the A -unsub-stituted compounds, the ultraviolet,fluorescence, and infrared spectra of a series of such compounds support the amide structure only. 

Tlie infrared spectra revealed the dominance of the 2-oxo (153) and 5-0X0 (157) structures (amide or lactam tautomers) over the 2-hydroxy (154) and the 5-hydroxy (192) structures (imidic acid or lactim tautomers)... 

Quinoxalin-2-ones are in tautomeric equilibrium with 2-hydroxy-quinoxalines, but physical measurements indicate that both in solution and in the solid state they exist as cyclic amides rather than as hydroxy compounds. Thus quinoxalin-2-one and its A -methyl derivative show practically identical ultraviolet absorption and are bases of similar strength. In contrast, the ultraviolet spectra of quinoxalin-2-one and its 0-methyl derivative (2-methoxyquinoxaIine) are dissimilar. The methoxy compound is also a significantly stronger base (Table II). Similar relationships also exist between the ultraviolet absorption and ionization properties of 3-methylquinoxalin-2-one and its N- and 0-methyl derivatives. The infrared spectrum of 3- (p-methoxy-benzyl)quinoxalin-2-one (77) in methylene chloride shows bands at 3375 and 1565 cm" which are absent in the spectrum of the deuterated... 

A criterion for the position of the extent of the mesomerism of type 9 is given by the bond order of the CO bond, a first approximation to W hich can be obtained from the infrared spectrum (v C=0). Unfortunately, relatively little is known of the infrared spectra of amide anions. How-ever, it can be assumed that the mesomeric relationships in the anions 9 can also be deduced from the infrared spectra of the free amides (4), although, of course, the absolute participation of the canonical forms a and b in structures 4 and 9 is different. If Table I is considered from this point of view, the intimate relationship betw-een the position of the amide band 1 (v C=0) and the orientation (0 or N) of methylation of lactams by diazomethane is unmistakeable. Thus the behavior of a lactam tow ard diazomethane can be deduced from the acidity (velocity of reaction) and the C=0 stretching frequency (orientation of methylation). Three major regions can be differentiated (1) 1620-1680 cm h 0-methylation (2) 1680-1720 cm i, O- and A -methylation, w ith kinetic dependence and (3) 1730-1800 em , A -methylation, The factual material in Table I is... 

Infrared radiation, electromagnetic spectrum and, 419, 422 energy of. 422 frequencies of, 422 wavelengths of, 422 Infrared spectroscopy, 422-431 acid anhydrides, 822-823 acid chlorides, 822-823 alcohols. 428, 632-633 aldehydes, 428. 730-731 alkanes, 426-427 alkenes, 427 alkynes, 427 amides. 822-823 amines, 428, 952 ammonium salts, 952-953 aromatic compound, 427-428, 534 bond stretching in, 422... 

B (hydrogen-bond acceptor) unit, as it is also present in many of the derivatives that are not sweet. Its presence in these derivatives promotes the cis orientation of the amide (or thioamide) bond formed with the aniline amino group, as it is known, from infrared and n.m.r. studies, that a bulky substituent on an amide (or thioamide) favors the cis orientation, owing to the steric interaction between the bulky group and the carbonyl oxygen atom. Such an arrangement will bring the AH,B system into the correct spatial separation from the D unit. 

The Fourier Trairsform Infrared (FTIR) spectrum obtained from non-adapted tomato cell walls is very similar to that from the onion parenchyma cell wall (both contain cellulose, xyloglucan and pectin) although there is more protein in the tomato walls (amide stretches at 1550 and 1650 cm-i) (Fig 4). In DCB-adapted tomato cell walls, the spectrum more closely resembles that of either purified pectins or of a commercial polygalacturonic acid sample from Sigma with peaks in common at 1140, 1095, 1070, 1015 and 950 cm-t in the carbohydrate region of the spectrum as well as the free acid stretches at 1600 and 1414 cm-i and an ester peak at 1725 cm-k An ester band at 1740 cm-i is evident in both onion parenchyma and non-adapted tomato cell wall samples. It is possible that this shift in the ester peak simply reflects the different local molecular environment of this bond, but it is also possible that a different ester is made in the DCB-adapted cell walls, as phenolic esters absorb around 1720 cm-i whilst carboxylic esters absorb at 1740 cm-k The... 

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