Hydrolysis of nucleotides

RING finger proteins may have other domains associated with signal transduction, such as SH3 and STAT domains and domains that bind and effect hydrolysis of nucleotides in signal transduction or for other purposes. These include ATPases, ATP synthases, serine/threonine kinases, GTP-binding domains, ADP-ribosylation domains and AAA-superfamily ATPases (http //home.cancer.gov/lpds/weissman). 

IFs assemble by entirely distinct mechanisms compared to the assembly of actin or tubulin. Unlike actin or tubulin polymers, IFs are symmetric in their longitudinal direction and the assembly of IFs does not require hydrolysis of nucleotides. The initial step in IF assembly is formation of parallel coiled-coil homodimer or heterodimer pairs of IF proteins, depending on the class of IF. The dimers then assemble head-to-head in a partly staggered lateral arrangement to form symmetric tetramers (Figure 4). Tetramers then assemble into an intermediate... 

Besides the many esters isolated from yeast and muscle tissue, Levene and his associates prepared ribose 3- and 5-phosphates by hydrolysis of nucleotides (Wl). a-n-Glucose 1-phosphate was isolated by Cori, Colowick, and Cori ( 02) as a product of the phosphorolysis of glycogen. Leloir and... 

Lymn, R. W. Taylor, E. W. (1970). Transient state phosphate production in the hydrolysis of nucleotide triphosphates by myosin. Biochemistry, 9, 2975-83. 

Cytosine was isolated from hydrolysis of calf thymus in 1894 and by 1903 its structure was known and it had been synthesized from 2-ethylthiopyrimidin-4(3H)-one. The acid hydrolysis of ribonucleic acid gives nucleotides, among which are two cytidylic acids, 2 -and 3 -phosphates of cytidine further hydrolysis gives cytidine itself, i.e. the 1-/3-D-ribofuranoside of cytosine, and thence cytosine. The deoxyribonucleic acids likewise yield deoxyribonucleotides, including cytosine deoxyribose-5 -phosphate, from which the phosphate may be removed to give cytosine deoxyriboside and thence cytosine. 

Methylcytosine (964 X = O) was synthesized in 1901 and its isolation from hydrolyzates of tubercule bacilli was reported in 1925. However, this was later shown to be incorrect and only about 1950 was it isolated by hydrolysis of the deoxyribonucleotide fractions from thymus, wheat germ and other sources (50MI21302). Nucleotides and a nucleoside of 5-methylcytosine are known. 

Most reactions of nucleic acid hydrolysis break bonds in the polynucleotide backbone. Such reactions are important because they can be used to manipulate these polymeric molecules. For example, hydrolysis of polynucleotides generates smaller fragments whose nucleotide sequence can be more easily determined. 

A nitrophenylsulfenate, cleaved by nucleophiles under very mild conditions, was developed as protection for a hydroxyl group during solid-phase nucleotide synthesis. The sulfenate ester is stable to the acidic hydrolysis of acetonides. ... 

The nucleic acids DNA (deoxyribonucleic acid) and RNA (ribonucleic acid) are biological polymers that act as chemical carriers of an organism s genetic information. Enzyme-catalyzed hydrolysis of nucleic acids yields nucleotides, the monomer units from which RNA and DNA are constructed. Further enzyme-catalyzed hydrolysis of the nucleotides yields nucleosides plus phosphate. Nucleosides, in turn, consist of a purine or pyrimidine base linked to Cl of an aldopentose sugar—ribose in RNA and 2-deoxyribose in DNA. The nucleotides are joined by phosphate links between the 5 phosphate of one nucleotide and the 3 hydroxyl on the sugar of another nucleotide. 

Cyclic nucleotide phosphodiesterases (PDEs) are a class of enzymes that catalyze the hydrolysis of 3, 5 -cyclic guanosine monophosphate (cGMP) or 3, 5 -cyclic adenosine monophosphate (cAMP) to 5 -guanosine monophosphate (GMP) or 5 -adenosine monophosphate (AMP), respectively. 

The Nucleotide Sequence in Deoxypentosenucleic Acids. Part III. The Nature of the End Groups Produced by Alkaline Hydrolysis of Calf Thymus aldehydo Apurinic Acid Di(carboxymethyl) Dithioacetal, A. S. Jones, D, S. Letham, and M. Stacey,/. Chem. Soc., (1956) 2584-2586. 

Monomeric actin binds ATP very tightly with an association constant Ka of 1 O M in low ionic strength buffers in the presence of Ca ions. A polymerization cycle involves addition of the ATP-monomer to the polymer end, hydrolysis of ATP on the incorporated subunit, liberation of Pi in solution, and dissociation of the ADP-monomer. Exchange of ATP for bound ADP occurs on the monomer only, and precedes its involvement in another polymerization cycle. Therefore, monomer-polymer exchange reactions are linked to the expenditure of energy exactly one mol of ATP per mol of actin is incorporated into actin filaments. As a result, up to 40% of the ATP consumed in motile cells is used to maintain the dynamic state of actin. Thus, it is important to understand how the free energy of nucleotide hydrolysis is utilized in cytoskeleton assembly. 

Polymer growth J(c) showed nonlinear monomer concentration dependence in the presence of ATP (Carrier et al., 1984), while in the presence of ADP, the plot of J(c) versus monomer concentration for actin was a straight line, as expected for reversible polymerization. The data imply that newly incorporated subunits dissociate from the filament at a slower rate than internal ADP-subunits in other words, (a) the effect of nucleotide hydrolysis is to decrease the stability of the polymer by increasing k and (b) nucleotide hydrolysis is uncoupled from polymerization and occurs in a step that follows incorporation of a ATP-subunit in the polymer. Newly incorporated, slowly dissociating, terminal ATP-subunits form a stable cap at the ends of F-actin filaments. 

STEREOCHEMISTRY OF NUCLEOTIDE BINDING TO ACTIN AND TUBULIN ROLE OF DIVALENT METAL ION IN NUCLEOTIDE BINDING AND HYDROLYSIS... 

How can hydrolysis of ATP produce macroscopic movement Muscle contraction essentially consists of the cychc attachment and detachment of the S-1 head of myosin to the F-actin filaments. This process can also be referred to as the making and breaking of cross-bridges. The attachment of actin to myosin is followed by conformational changes which are of particular importance in the S-1 head and are dependent upon which nucleotide is present (ADP or ATP). These changes result... 

The second B. thuringiensis toxin, the /3-exotoxin has a much broader spectrum encompassing the Lepidoptera, Coleoptera and Diptera. It is an adenine nucleotide, probably an ATP analogue which acts by competitively inhibiting enzymes which catalyse the hydrolysis of ATP and pyrophosphate. This compound, however, is toxic when administered to mammals so that commercial preparations of the B. thuringiensis 5-endotoxin are obtained from strains which do not produce the j8-exotoxin. 

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