Cysteine residues bacterial

Once a suitable crystal is obtained and the X-ray diffraction data are collected, the calculation of the electron density map from the data has to overcome a hurdle inherent to X-ray analysis. The X-rays scattered by the electrons in the protein crystal are defined by their amplitudes and phases, but only the amplitude can be calculated from the intensity of the diffraction spot. Different methods have been developed in order to obtain the phase information. Two approaches, commonly applied in protein crystallography, should be mentioned here. In case the structure of a homologous protein or of a major component in a protein complex is already known, the phases can be obtained by molecular replacement. The other possibility requires further experimentation, since crystals and diffraction data of heavy atom derivatives of the native crystals are also needed. Heavy atoms may be introduced by covalent attachment to cystein residues of the protein prior to crystallization, by soaking of heavy metal salts into the crystal, or by incorporation of heavy atoms in amino acids (e.g., Se-methionine) prior to bacterial synthesis of the recombinant protein. Determination of the phases corresponding to the strongly scattering heavy atoms allows successive determination of all phases. This method is called isomorphous replacement. 

Ferredoxins. Ferredoxins are proteins which contain two or four iron atoms bound to cysteine and inorganic sulfur atoms as shown in Fig. IB. There are two types of ferredoxins plant type ferredoxins (top) which consist of two iron and two labile sulfur atoms coordinated to four cysteine residues, and bacterial type ferredoxins (bottom) consisting of four iron and four labile sulfur atoms coordinated to four cysteine residues. 

Active Site Structure of Rubredoxin There are several non-heme iron-sulphur proteins that are involved in electron transfer. They contain distinct iron-sulphur clusters composed of iron atoms, sulphydryl groups from cysteine residues and inorganic or labile sulphur atoms or sulphide ions. The labile sulphur is readily removed by washing with acid. The cysteine moieties are incorporated within the protein chain and are thus not labile. The simplest type of cluster is bacteria rubredoxin, (Cys-S)4 Fe (often abbreviated FelSO where S stands for inorganic sulphur), and contains only non labile sulphur. It is a bacterial protein of uncertain function with a molecular weight of 6000. The single iron atom is at the centre of a tetrahedron of four cysteine ligands (Fig.). 

Crystals of pronase-released heads of the N2 human strains of A/Tokyo/3/67 [44] and A/RI/5+/57 were used for an x-ray structure determination. The x-ray 3-dimensional molecular structure of neuraminidase heads was determined [45] for these two N2 subtypes by a novel technique of molecular electron density averaging from two different crystal systems, using a combination of multiple isomorphous replacement and noncrystallographic symmetry averaging. The structure of A/Tokyo/3/67 N2 has been refined [46] to 2.2 A as has the structures of two avian N9 subtypes [47-49]. Three influenza type structures [50] have also been determined and found to have an identical fold with 60 residues (including 16 conserved cysteine residues) being invariant. Bacterial sialidases from salmonella [51] and cholera [52] have homologous structures to influenza neuraminidase, but few of the residues are structurally invariant. 

Fosfomycin trometamol, a stable salt of fosfomycin (phosphonomycin), inhibits a very early stage of bacterial cell wall synthesis (Figure 43-5). An analog of phosphoenolpyruvate, it is structurally unrelated to any other antimicrobial agent. It inhibits the cytoplasmic enzyme enolpyruvate transferase by covalently binding to the cysteine residue of the active site and blocking the addition of phosphoenolpyruvate to UDP-V-acetylglucosamine. This reaction is the first step in the... 

Fig. 7. Alignment of amino acid sequences in bacterial nitrilases Jl, rhodochrous Jl K22, R. rhodochrous K22 JM3, A.faecalis JM3 Bxn, K. ozaenae. An asterisk indicates the active cysteine residue...

G-protein a-subunits also possess specific residues that can be covalently modified by bacterial toxins. Cholera toxin catalyzes the transfer of ADP-ribose moiety of NAD to a specific arginine residue in certain a-subunits, whereas pertussis toxin ADP-ribosylates those a-subunits that contain a specific cysteine residue near the carboxy-terminus. Modification of the a-subunit by cholera toxin persistently activates these protein by inhibiting their GTPase activity, whereas pertussis toxin inactives Gia protein and thereby results in the uncoupling of receptor from the effector. G-protein a-subunits are regulated by covalent modifications by fatty acids myristate and palmate. These lipid modifications serve to anchor the subunits to the membrane and increase the interaction with other protein and also increase the affinity of the a-subunit for 3y. In this regard, the myristoylation of Gia is required for adenylyl cyclase inhibition in cell-free assay (Taussig et al. 1993). 

Bacterial lipoproteins (LP) are structural components of bacterial cell walls consisting of an S-glycerylcysteine moiety, where the glyceryl moiety is di-O-acylated and the cysteine residue is conjugated to the amino-terminus of various polypeptides. In addition, the cysteine a-amine may be acylated with an... 

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