Amino chromophore

As discussed in the earlier review of the chiroptical properties of the amino chromophore, it was recognized very early on the basis of optical rotatory dispersion (ORD) measurements that for some chiral amines. Cotton effects are associated with the electronic transitions below 250 nm, and the ECD spectra are characterized by two oppositely signed dichroic absorption bands in the region 190-240 nm (Figure 6) corresponding to the electronic absorption maxima of trimethylamine in the gas phase at 199 and 227 nm. The disappearance of the ECD bands on protonation of the nitrogen lone pair of electrons supports the conclusion that this dichroic absorption is associated with electronic transitions of the lone-pair electrons on the nitrogen atom. ... 

An other relevant class of type I polymers is given by polyimides [59-65]. As compared with polymethacrilates they show higher Tg and, in general, better time stability of NLO performances. The synthetic route to polyimides is versatile. They can be obtained by polymerization between bis-anhydrides and amino-chromophores. High performances are obtained using bis-phthalic anhydrides such as 3,3, 4,4 -oxydiphthalic anhydride (ODRA) or 4,4 -(hexafluoro-isopropylidene)diphthalic anhydride (6FDA). 

First, it is possible to excite a chromophore corresponding to the active site, and detennine which modes interact with it. Second, by using UV excitation, the amino acids with phenyl rings (tryptophan and tyrosine, and a small contribution from phenylalanine) can be selectively excited [4], The frequency shifts in the resonance Raman spectrum associated with them provide infomiation on their enviromnent. 

Sensitivity levels more typical of kinetic studies are of the order of lO molecules cm . A schematic diagram of an apparatus for kinetic LIF measurements is shown in figure C3.I.8. A limitation of this approach is that only relative concentrations are easily measured, in contrast to absorjDtion measurements, which yield absolute concentrations. Another important limitation is that not all molecules have measurable fluorescence, as radiationless transitions can be the dominant decay route for electronic excitation in polyatomic molecules. However, the latter situation can also be an advantage in complex molecules, such as proteins, where a lack of background fluorescence allow s the selective introduction of fluorescent chromophores as probes for kinetic studies. (Tryptophan is the only strongly fluorescent amino acid naturally present in proteins, for instance.)... 

A major trend in organic synthesis, however, is the move towards complex systems. It may happen that one needs to combine a steroid and a sugar molecule, a porphyrin and a carotenoid, a penicillin and a peptide. Also the specialists in a field have developed reactions and concepts that may, with or without modifications, be applied in other fields. If one needs to protect an amino group in a steroid, it is advisable not only to search the steroid literature but also to look into publications on peptide synthesis. In the synthesis of corrin chromophores with chiral centres, special knowledge of steroid, porphyrin, and alkaloid chemistry has been very helpful (R.B. Woodward, 1967 A. Eschenmoser, 1970). 

Xanthene dyes are those containing the xanthylhim [261-23-4] (la) or diben2o-y-pryan nucleus [92-83-1] (xanthene) (lb) as the chromophore with amino or hydroxy groups meta to the oxygen as the usual auxochromes. They are... 

Fiber-reactive dyes containing the fluorotriaziayl group are based on the condensation of chromophores containing amino groups with 6 - sub s titute d- 2,4- diflu o r o triaziae s. The latter can be prepared from cyanuric fluoride or from the reaction of alkah metal fluorides with... 

Almost all actinomycins have the same chromophore, a planar phenoxa2inone dicarboxyUc acid called actinocin. In dactinomycin, the stmcture of which is shown in Figure 12, the two pendent pentapeptide lactones are identical, but in other actinomycins these lactones may be different. In other actinomycins the first amino acid, amide linked with actinocin, is usually L-threonine, as in dactinomycin the second position is sometimes D-aHo-isoleucine instead of D-valine the third position may be sarcosine or oxoproline the fourth position is sarcosine and the fifth position is sometimes /V-methyl isoleucine instead of /V-methylvaline. The lactone ring is always present. 

Dyestuff organic chemistry is concerned with designing molecules that can selectively absorb visible electromagnetic radiation and have affinity for the specified fiber, and balancing these requirements to achieve optimum performance. To be colored the dyestuff molecule must contain unsaturated chromophore groups, such as a2o, nitro, nitroso, carbonyl, etc. In addition, the molecule can contain auxochromes, groups that supplement the chromophore. Typical auxochromes are amino, substituted amino, hydroxyl, sulfonic, and carboxyl groups. 

Amino-4,6-dimethyl-3-oxo-3//-phenoxazine-l,9-dicarboxylic acid also named actinocin is the chromophor of the red antineoplastic chromopeptide aetinomyein D (formula A). Two cyclopenta-peptide lactone rings (amino acids L-threonine, D-valine, L-proline, sarcosine, and 7V-methyl-L-valine) are attached to the carboxy carbons of actinocin by two amide bonds involving the amino groups of threonine. 

Antocatalytic oxidation of GFP amino acids leads to the chromophore shown on the left. The green fluorescence requires fnrtlier interactions of the chromophore witli otlier parts of die protein. 

ZN(C)153, 00ZN(C)323, 00ZN(C)857, 01MI2, 01MIP4, 01TL5849). 5-Amino-8,9-dihydroxy-2,3-dihydro-l//-pyrimido[l,2-u]quinoline-3-carboxylic acid moiety 4 was also identified as a chromophoric moiety of certain... 

Aminoquinoxaline exists predominantly as such rather than in the tautomeric imino form. This is indicated by a comparison of the basic strength of the 2-amino compound (pKo 3.90) and those of its fixed methylated tautomers, 2-dimethylaminoquinoxaline pKa 3.72) and l-methylquinoxalin-2-oneimine (pfCn 8.70). The ultraviolet spectrum of the neutral molecule of 2-dimethylaminoquinoxaline shows the expected bathochromic shifts compared to that of 2-aminoquinoxaline these spectra differ from the ultraviolet spectrum of the neutral molecule of l-methylquinoxalin-2-oneimine (Fig. 1). The mono-cations (68) and (69) derived from 2-aminoquinoxaline and l-methylquinoxalin-2-oneimine have a similar chromophoric system and show almost identical ultraviolet absorption (Fig. 2). 

For quantitative work, it is necessary to estimate the concentration of 5-amino-l-(P-D-ribofuranosyl)imidazole in aqueous solution. It seems that the only available method is the Bratton-Marshall assay, which was originally developed for the estimation of arylamines in biological fluids. The principle of the method is the spectrometric estimation of a salmon-pink colored dyestuff obtained by diazotation in situ, followed by coupling with /V-( 1 -naphthyl)ethyl-enediamine.65 The only remaining problem then is to know the molar extinction of this dye because pure samples of AIRs are not available. A value of 16800 at 520 nM was obtained for the dyes prepared from a model compound, 5-amino-l-cyclohexylimidazole-4-carboxylic acid (54), which is crystalline. A comparable molar extinction can be expected for the dye prepared from imidazole 55, if the carboxyl group does not exert too much influence on the chromophore. Actually, its influence is perceptible even with the naked eye, the dyestuff prepared from 53 having a somewhat different, wine-red color, with max>520 nM. The molar extinction for 55 is 17400 at 500 nM. When the decarboxylation of 54 was conducted under mild acidic conditions (pH 4.8, 50°C, 1 hour), estimation of 5-aminoimidazole 55 by the Bratton-Marshall method led to the conclusion that the reaction was almost quantitative.66 Similar conditions for the final decarboxylation were adopted in the preparation of samples of AIRs labeled with stable isotopes.58... 

Listowsky and coworkers showed that the c.d. of this sugar derivative is due entirely to lactic acid, and confirmed that this chromophore is in the D configuration for muramic acid. N-Acetylmuramic acid, in which the amino group is replaced by an amido group at C-2, has a c.d. spectrum that is roughly a linear combination of the lactic acid in muramic acid and the amide in 2-acetamido-2-deoxy-D-glucose. This indicates that the amide chromophore and the lactic acid chromophore in N-acetylmuramic acid behave independently. 

In Edman sequencing, the N-terminal amino acids are sequentially cleaved and labeled with a hydrophobic chromophore. Then, the labeled... 

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