Amide chromophores

Aliphatic polyamides (PA) and products on their base are polymers with low stability to ultra-violet irradiation and under the effect of solar radiation they destruct less than in a year [1]. In natural conditions ultra-violet part of solar spectrum with wave-length 290-350 nm is more dangerous for these polymers, though aliphatic PAs in this field have very weak absorption of chromophore amide group [2, 3], That is why while examining the problem of PA phototransformations, unlike other polymers, both possibility of light absorption by impurities and self-absorption should be taken into consideration [4],... 

Almost all actinomycins have the same chromophore, a planar phenoxa2inone dicarboxyUc acid called actinocin. In dactinomycin, the stmcture of which is shown in Figure 12, the two pendent pentapeptide lactones are identical, but in other actinomycins these lactones may be different. In other actinomycins the first amino acid, amide linked with actinocin, is usually L-threonine, as in dactinomycin the second position is sometimes D-aHo-isoleucine instead of D-valine the third position may be sarcosine or oxoproline the fourth position is sarcosine and the fifth position is sometimes /V-methyl isoleucine instead of /V-methylvaline. The lactone ring is always present. 

In the course of developing the Polacolor and SX-70 processes many insulated dye developers were synthesized and investigated. An extensive review of this work is available (21). The insulating linkage, chromophore, and developer moiety can each be varied. Substituents on the developer modify development and solubility characteristics substituents on the chromophore modify the spectral characteristics in terms of both color and tight stability. The attachment of two dyes to a single developer by amide linkage has also been described (22). 

Amino-4,6-dimethyl-3-oxo-3//-phenoxazine-l,9-dicarboxylic acid also named actinocin is the chromophor of the red antineoplastic chromopeptide aetinomyein D (formula A). Two cyclopenta-peptide lactone rings (amino acids L-threonine, D-valine, L-proline, sarcosine, and 7V-methyl-L-valine) are attached to the carboxy carbons of actinocin by two amide bonds involving the amino groups of threonine. 

Although the n-n and tz-tz electronic transitions of the urea chromophore have not been studied as extensively as amides, the contribution of the backbone is expected to dominate the far UV spectra of oligoureas in a fashion similar to that which is observed for peptides. The CD spectra recorded in MeOH of oligoureas 177 and 178 show an intense maximum near 204 nm (Figure 2.48). This is in contrast to helical y" -peptides that do not exhibit any characteristic CD signature. 

Amide derivatives have proved especially useful sugars for study by c.d. spectroscopy. The amide substituent is the same as the chromophore found in proteins, so that its optical properties have been extensively studied both experimentally and theoretically. 2-Acetamido sugars are found in many glycoproteins. The structure of 2-acetamido-2-deoxy-a-D-glucopyranose is given as an example in formula 7. 

V-Acetylneuraminic acid is a common group in glycoproteins, and it contains both the amide and carboxyl chromophores. As shown in formula 11, this nine-carbon sugar derivative has an equatorial amido group on C-5 and both a hydroxyl group and a carboxyl group on the anomeric carbon atom. 

The carboxyl chromophore is axial for the a anomer and equatorial for the p anomer. The sugar was studied as the carboxylate anion as it has a (low) piC of 2.6, and the compound is degraded in acidic solution. The c.d. spectrum of this compound contains contributions from the carboxylate n-jr at 217 nm, the amide n-tr at 210 nm, and the amide 7T7r at 190 nm. Apparently, all of these bands are positive, giving rise to a c.d. spectrum (see Fig. 29) having " a maximum at 199 nm and a shoulder at 210 nm. The c.d. spectra of a number of derivatives confirmed these assignments. 

Listowsky and coworkers showed that the c.d. of this sugar derivative is due entirely to lactic acid, and confirmed that this chromophore is in the D configuration for muramic acid. N-Acetylmuramic acid, in which the amino group is replaced by an amido group at C-2, has a c.d. spectrum that is roughly a linear combination of the lactic acid in muramic acid and the amide in 2-acetamido-2-deoxy-D-glucose. This indicates that the amide chromophore and the lactic acid chromophore in N-acetylmuramic acid behave independently. 

Significantly, the bio-inorganic and polymer-containing PM nanocomposites showed no significant shift in the protein amide I and II vibration bands, or in the characteristic 567 nm optical absorption band of the retinal chromophore of BR, indicating that the structural and dynamical properties of the membrane-bound... 

The second chromophore involves another a,g-unsaturated ketone that is in conjugation with an anomalously behaving amide (7). The tertiary amine is responsible for the basic character and the phenolic group is acidic. CTC is fluorescent and can be assayed polarographically (8). 

Antibodies produced by this procedure were screened for their ability to react with the hapten to form the vinylogous amide 6, which has a convenient UV chromophore near 318nm, clear of the main protein absorption. Two antibodies selected in this way catalysed the expected aldol reaction of acetone with aldehyde 7 by way of the enamine 8 (Scheme 3) the remainder did not. These two effective aldolase mimics have been studied in some detail, and a crystal structure is available for (a Fab fragment of) one of them.126,281... 

Drugs with a chromophore such as that of procaine include procainamide and proxymetacaine. It should be noted that local anaesthetics such as bupivacaine and lignocaine do not fall into this category since they are aromatic amides and the lone pair on the nitrogen atom is not fully available due to electron withdrawal by the adjacent carbonyl group. 

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