Acids Activated complex

The regioselectivity benefits from the increased polarisation of the alkene moiety, reflected in the increased difference in the orbital coefficients on carbon 1 and 2. The increase in endo-exo selectivity is a result of an increased secondary orbital interaction that can be attributed to the increased orbital coefficient on the carbonyl carbon ". Also increased dipolar interactions, as a result of an increased polarisation, will contribute. Interestingly, Yamamoto has demonstrated that by usirg a very bulky catalyst the endo-pathway can be blocked and an excess of exo product can be obtained The increased di as tereo facial selectivity has been attributed to a more compact transition state for the catalysed reaction as a result of more efficient primary and secondary orbital interactions as well as conformational changes in the complexed dienophile" . Calculations show that, with the polarisation of the dienophile, the extent of asynchronicity in the activated complex increases . Some authors even report a zwitteriorric character of the activated complex of the Lewis-acid catalysed reaction " . Currently, Lewis-acid catalysis of Diels-Alder reactions is everyday practice in synthetic organic chemistry. 

The rate of the Lewis-acid catalysed Diels-Alder reaction in water has been compared to that in other solvents. The results demonstrate that the expected beneficial effect of water on the Lewis-acid catalysed reaction is indeed present. However, the water-induced acceleration of the Lewis-add catalysed reaction is not as pronounced as the corresponding effect on the uncatalysed reaction. The two effects that underlie the beneficial influence of water on the uncatalysed Diels-Alder reaction, enforced hydrophobic interactions and enhanced hydrogen bonding of water to the carbonyl moiety of 1 in the activated complex, are likely to be diminished in the Lewis-acid catalysed process. Upon coordination of the Lewis-acid catalyst to the carbonyl group of the dienophile, the catalyst takes over from the hydrogen bonds an important part of the activating influence. Also the influence of enforced hydrophobic interactions is expected to be significantly reduced in the Lewis-acid catalysed Diels-Alder reaction. Obviously, the presence of the hydrophilic Lewis-acid diminished the nonpolar character of 1 in the initial state. 

Apart from Bronsted acid activation, the acetyl cation (and other acyl ions) can also be activated by Lewis acids. Although the 1 1 CH3COX-AIX3 Friedel-Crafts complex is inactive for the isomerization of alkanes, a system with two (or more) equivalents of AIX3 was fonnd by Volpin to be extremely reactive, also bringing abont other electrophilic reactions. 

Here we have the formation of the activated complex from five molecules of nitric acid, previously free, with a high negative entropy change. The concentration of molecular aggregates needed might increase with a fall in temperature in agreement with the characteristics of the reaction already described. It should be noticed that nitration in nitromethane shows the more common type of temperature-dependence (fig. 3.1). 

The achiral triene chain of (a//-rrans-)-3-demethyl-famesic ester as well as its (6-cis-)-isoiner cyclize in the presence of acids to give the decalol derivative with four chirai centres whose relative configuration is well defined (P.A. Stadler, 1957 A. Escherunoser, 1959 W.S. Johnson, 1968, 1976). A monocyclic diene is formed as an intermediate (G. Stork, 1955). With more complicated 1,5-polyenes, such as squalene, oily mixtures of various cycliz-ation products are obtained. The 18,19-glycol of squalene 2,3-oxide, however, cyclized in modest yield with picric acid catalysis to give a complex tetracyclic natural product with nine chiral centres. Picric acid acts as a protic acid of medium strength whose conjugated base is non-nucleophilic. Such acids activate oxygen functions selectively (K.B. Sharpless, 1970). 

Enzyme—Heat—Enzyme Process. The enzyme—heat—enzyme (EHE) process was the first industrial enzymatic Hquefaction procedure developed and utilizes a B. subtilis, also referred to as B. amjloliquefaciens, a-amylase for hydrolysis. The enzyme can be used at temperatures up to about 90°C before a significant loss in activity occurs. After an initial hydrolysis step a high temperature heat treatment step is needed to solubilize residual starch present as a fatty acid/amylose complex. The heat treatment inactivates the a-amylase, thus a second addition of enzyme is required to complete the reaction. 

The reaction is proposed to proceed from the anion (9) of A/-aminocatbonylaspattic acid [923-37-5] to dehydrooranate (11) via the tetrahedral activated complex (10), which is a highly charged, unstable sp carbon species. In order to design a stable transition-state analogue, the carboxylic acid in dihydrooronate (hexahydro-2,6-dioxo-4-pyrimidinecarboxylic acid) [6202-10-4] was substituted with boronic acid the result is a competitive inhibitor of dibydroorotase witb a iC value of 5 ]lM. Its inhibitory function is supposedly due to tbe formation of tbe charged, but stable, tetrabedral transition-state intermediate (8) at tbe active site of tbe enzyme. 

Death domain (DD) superfamily consists of structurally related homotypic interaction motifs of approximately 90 amino acids. The motifs are organized in six antiparallel amphipathic a-helices, the so-called DD fold. The four members of the super family are the death domain (DD), the death effector domain (DED), the caspase activation and recruitment domain (CARD), and the Pyrin domain. All are important mediators for the assembly of caspase activating complexes. 

Acid-base catalysis, 232-238 Brqnsted equation for, 233-236 general, 233, 237 mechanisms for, 237 specific, 232-233, 237 Activated complex (see Transition state) Activation enthalpy, 10, 156-160 for composite rate constants, 161-164 negative, 161 Activation parameters, 10 chemical interpretation of, 168-169 energy of activation, Ea, 10 enthalpy of activation (A// ), 10, 156-160... 

An example of a reaction series in which large deviations are shown by — R para-substituents is provided by the rate constants for the solvolysis of substituted t-cumyl chlorides, ArCMe2Cl54. This reaction follows an SN1 mechanism, with intermediate formation of the cation ArCMe2 +. A —R para-substituent such as OMe may stabilize the activated complex, which resembles the carbocation-chloride ion pair, through delocalization involving structure 21. Such delocalization will clearly be more pronounced than in the species involved in the ionization of p-methoxybenzoic acid, which has a reaction center of feeble + R type (22). The effective a value for p-OMe in the solvolysis of t-cumyl chloride is thus — 0.78, compared with the value of — 0.27 based on the ionization of benzoic acids. 

The Fatty Acid Synthase Complex Is a Polypeptide Containing Seven Enzyme Activities... 

Figure 38-1. Formation of aminoacyl-tRNA. A two-step reaction, involving the enzyme aminoacyl-tRNA synthetase, results in the formation of aminoacyl-tRNA. The first reaction involves the formation of an AMP-amino acid-enzyme complex. This activated amino acid is next transferred to the corresponding tRNA molecule. The AMP and enzyme are released, and the latter can be reutilized. The charging reactions have an error rate of less than 10" and so are extremely accurate.

Apart from the hardness and softness, two reactivity-related features need to be pointed out. First, iron salts (like most transition metal salts) can operate as bifunctional Lewis acids activating either (or both) carbon-carbon multiple bonds via 71-binding or (and) heteroatoms via a-complexes. However, a lower oxidation state of the catalyst increases the relative strength of coordination to the carbon-carbon multiple bonds (Scheme 1). 

The reaction between Fe(IlI) and Sn(Il) in dilute perchloric acid in the presence of chloride ions is first-order in Fe(lll) concentration . The order is maintained when bromide or iodide is present. The kinetic data seem to point to a fourth-order dependence on chloride ion. A minimum of three Cl ions in the activated complex seems necessary for the reaction to proceed at a measurable rate. Bromide and iodide show third-order dependences. The reaction is retarded by Sn(II) (first-order dependence) due to removal of halide ions from solution by complex formation. Estimates are given for the formation constants of the monochloro and monobromo Sn(II) complexes. In terms of catalytic power 1 > Br > Cl and this is also the order of decreasing ease of oxidation of the halide ion by Fe(IlI). However, the state of complexing of Sn(ll)and Fe(III)is given by Cl > Br > I". Apparently, electrostatic effects are not effective in deciding the rate. For the case of chloride ions, the chief activated complex is likely to have the composition (FeSnC ). The kinetic data cannot resolve the way in which the Cl ions are distributed between Fe(IlI) and Sn(ll). 

The problem has been partially resolved in a later note by Peterson and Duke describing their investigation of the reaction between Sn(II) and the ferricinium ion. Ferricinium perchlorate was prepared by oxidation of ferrocene with AgC104 in aqueous perchloric acid from the nature of the ferricinium structure, Fe(III) is unlikely to complex with more than one chloride ion. The reaction, followed by absorbance measurements on the ferricinium ion at 615 m/i, is first-order in both reactants. The chloride-ion dependence indicates a total of five Cl ions in the activated complex, four of which are deduced to be associated with Sn(ll) as SnCU . 

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