Reference map

As mentioned in Section 4.1.1, the number of random scatterers n has to be chosen in input. Five BUSTER runs used values of n in the series n = nvafcnce x N N = 60, 70, 80, 90, 100. The rms deviation from the reference map varied between 0.0317 and 0.0293 e A 3, the latter value pertaining to the run with N = 90 this value of n was then used in the calculation described below. 

Figure 6(b) shows the difference between the MaxEnt valence density and the reference density, in the COO- plane. The error peaks in the bonding and lone-pair regions, where the deformation features are systematically lower than the reference map (negative contours). The deviation from the reference is largest in the region around the Cl atom valence shell, and reaches -0.406 e A 3. 

The statistical degree of overlapping (SDO) and 2D autocovariance function (ACVF) methods have been applied to 2D-PAGE maps (Marchetti et al., 2004 Pietrogrande et al., 2002, 2003, 2005, 2006a Campostrini et al., 2005) the means for extracting information from the experimental data and their relevance to proteomics are discussed in the following. The procedures were validated on computer-simulated maps. Their applicability to real samples was tested on reference maps obtained from literature sources. Application to experimental maps is also discussed. 

Moreover, experimental reference maps of human tissues were studied p7 and Mr coordinates of identified spots were retrieved from the SWISS-2D-PAGE database, the values <3X = 0.009 pH and av = 0.0002 log Mr were assumed for spot dimension since they represent the standard case for experimental 2D-PAGE maps—normal sample loading of a tissue homogenate (ca. 1 mg total protein) and standard gel sizes (18 x 20 cm, IEF x SDS-PAGE). 

Fountoulakis M et al. Reference map of the low molecular mass proteins of Haemophilus influenzae. Electrophoresis 1998 19 1819-1827. 

Qi SY et al. Proteome of Salmonella typhi-murium SL1344 identification of novel abundant cell envelope proteins and assignment to a two-dimensional reference map. J Bacterid 1996 178 5032-5038. 

Scharfe C et al. MITOP, the mitochondrial proteome database 2000 update. Nucleic Acids Res 2000 28 155-158. Molloy MP et al. Establishment of the human reflex tear two-dimensional polyacrylamide gel electrophoresis reference map new proteins of potential diagnostic value. Electrophoresis 1997 18 2811-2815. 

Using the reference maps for Flpter measurements available through the Internet, (E.g., Resource for Molecular Cytogenetics at Lawrence Berkeley National Laboratories and the University of California, San Francisco http //rmc-www.lbl.gov/), and also noted by Bray-Ward and colleagues (11), identify candidate loci or specific markers for the region of interest. 

Erneholm, Ivar, Cacao Production of South America, 86 references, maps, citations, 280 pages, Goteborg, C. R. Holmquists Boktryckeri A. B., 1948. 

References Map, charts, smoke overlays, and other relevant documents. 

References Maps (series number, sheet(s), edition, scale). 

A high-resolution reference map for cytoplasmic and membrane-associated proteins of Corynebacterium glutamicum. Electrophoresis, 22 (20), 4404-4422. 

Heim, S., Ferrer, M., Heuer, H, Regenhardt, D., Nimtz, M, and Ummis, K.N. (2003) Proteome reference map of Pseudomonas putida strain KT2440 for genome expression profiling distinct responses of KT2440 and Pseudomonas aeruginosa strain PAOl to iron deprivation and a new form of superoxide dismutase. Enviroru Microbiol, 5 (12), 1257-1269. 

Mao S, Luo Y, Zhang T, Li J, Bao G, Zhu Y, Chen Z, Zhang Y, Li Y, Ma Y. (2010). Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield. J Proteome Res, 9, 3046-3061. 

Murugaiyan J, Weise C, von BM, Roesler U. Two-dimensional proteome reference map oiProto-theca zopfli revealed reduced metabolism and enhanced signal transduction as adaptation to an infectious life style. Proteomics 2013 13 2664-9. 

Keith (1995) presented reference maps of mobilities of modified ribonucleotides and nucleosides separated by two-dimensional TLC on cellulose. Paw and Misztal (1995) isolated cytosine, uracil, and their arabinosides from human plasma by solid-phase extraction and Adsobex minicolumns and separated them by horizontal and ascending TLC in various mobile phases. 

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