Genome expression profiling

Ma, L, Zhao, H., Deng, X. W. Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development. Development 2003, 330, 969-981. 

Gunther EC, Stone DJ, Gerwien RW, Bento P, Heyes MP. Prediction of clinical drug efficacy by classification of drug-induced genomic expression profiles in vitro. Proc Natl Acad Sci USA 2003 100 9608-9613. 

Thomas, J. G., Olson, J. M., Tapscott, S. J., and Zhao, L. P. (2001). An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles. Genome Research, 11, 1227-1236. 

Mock, T., Samanta, M., Iverson, V., Berthiaume, C., Robison, M., Holtermann, K., Durkin, C., Bonduran, t., SS., Richmond, K., Rodesch, M., Kallas, T., Hutthn, E., Cerrina, F., Sussman, M., and EV, A. (2008). Whole-genome expression profiling of the marine diatom. Thalassiosira pseudonana identifies genes involved in sihcon bioprocesses. Proc. Natl. Acad. Sd. 105, 1579—1584. 

M. Stangegaard, Z. Wang, J.P. Kutter, M. DufVa and A. Wolff, Whole genome expression profiling using DNA microarray for determining biocompatibility of polymeric surfaces. Molecular Biosystems, 2(9), 421 28 (2006). 

Heim, S., Ferrer, M., Heuer, H, Regenhardt, D., Nimtz, M, and Ummis, K.N. (2003) Proteome reference map of Pseudomonas putida strain KT2440 for genome expression profiling distinct responses of KT2440 and Pseudomonas aeruginosa strain PAOl to iron deprivation and a new form of superoxide dismutase. Enviroru Microbiol, 5 (12), 1257-1269. 

Callow MJ et al. Microarray expression profiling identifies genes with altered expression in HDL-deficient mice. Genome Res 2000 10 2022-2029. 

Lyn D et al. Gene expression profile in mouse myocardium after ischemia. Physiol Genomics 2000 2 93-100. 

Antibody arrays are used in detection and expression profiling of e.g. cytokines (Figure 3)2 4 and allergens (www.vbc-genomics.com). Microarrays containing antigens are developed for detection of autoantibodies in rheumatoid diseases5. 

Grimplet J, Deluc LG, Tillett RL, Wheatley MD, Schlauch KA, Cramer GR and Cushman JC. 2007. Tissue-specific mRNA expression profiling in grape berry tissues. BMC Genomics 8 187. 

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