Gene-expression microarray

Tan, Y. X., Shi, L. B Tong, W. D Hwang, G. T. G., Wang, C. (2004). Multiclass tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models. Compu. Biol. Chemis. 28(3), 235-244. 

Lee Ml, Kuo FC, Whitmore GA, Sklar J. 2000. Importance of replication in microarray gene expression studies statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci USA 97 9834. 

Figure 5.22 Investigating the pathogenesis of glaucoma based upon microarray gene expression clustering. (From Hernandez, M.R., GLIA, 38 45-64, 2002. With permission.)...

Mechanisms of Disease biomarkers and molecular targets from microarray gene expression studies in prostate cancer. Nature Clinked Practices in Urology, 4, 677-687. 

Sorensen KD, Orntoft TF (2010) Discovery of prostate cancer biomarkers by microarray gene expression profiling. Expert Rev Mol Diagn 10 49-64... 

Pounds S, Cheng C (2005) Statistical development and evaluation of microarray gene expression data filters. J Comput Biol 12 482-495. doi 10.1089/cmb.2005.12.482... 

Chen YJ et al (2003) Normalization methods for analysis of microarray gene-expression data. J Biopharm Stat 13 57-74... 

Prasad TV, Ahson SI (2006) Visualization of microarray gene expression data. Bioinformation 1 141-145... 

Li Y, Ali S, Philip PA et al. Direct comparison of microarray gene expression profiles between nonamplification and a modified cDNA amplification procedure applicable for needle biopsy tissues. Cancer Detect Prev 2003 27 405 11. 

Karsten SL, Van Deerlin VM, Sabatti C et al. An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis. Nucleic Acids Res 2002 30 E4. 

Blower PE, Yang C, Fligner MA et al. Pharmacogenomic analysis correlating molecular substructure classes with microarray gene expression data. Pharmacogenomics J2002(2-.259-271. 

Jiang H, Deng Y, Chen HS et al. Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes. BMC Bioinformatics 2004 5 81. 

Key Words Toxieogenomics microarray gene expression profile genetic signature drug development biomarker drug resistance... 

Public repositories of microarray gene expression data have been developed to store the results of array experiments ArrayExpress (32) in Europe, Gene Expression Omnibus (GEO) in the United States (33), and the Center for Information Biology Gene Expression Database (CIBEX) (34) in Japan. Many journals already require an accession number (indicating that a data set has been submitted to one of these public databases) prior to publication. 

Brazma A, Parkinson HS, Sarkans U et al. ArrayExpress a publie repository for microarray gene expression data at the EBl. Nucleic Acids Res 2003 31 68-71. 

T.M. and Rimsza, L.M. (2007) Quantitative nuclease protection assay in paraffin-embedded tissue replicates prognostic microarray gene expression in diffuse large-B-cell lymphoma. Lab. Invest.,... 

RNAs analysis by Human Gene 1.0 ST microarrays. Genes expressed differentially confirmed by RT-qPCR... 

Stratowa C, Loffler G, Lichter P, Stilgenbauer S, Haberl P, Schweifer N, Dohner H, Wilgenbus KK. CDNA microarray gene expression analysis of B-cell chronic lymphocytic leukemia proposes potential new prognostic markers involved in lymphocyte trafficking. Int J Cancer 2001 91 474-480. 

Microarray Gene Expression Data (MGED) Society (http //www.mged.org)... 

Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA. ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 2003 31 68-71. 

Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS Jr, Ares M, Haussler D, Knowledge-based analysis of microarray gene expression data by using support vector machines, Proc. Natl. Acad. Sci. USA, 97 262-267, 2000. 

Youdim MB. What have we learnt from CDNA microarray gene expression studies about the role of iron in MPTP induced neurodegeneration and Parkinson s disease J Neural Transm Suppl 2003 (65) 73-88. 

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