Mass spectrometry-kinetic method

The experiments described above indicate that technology is available to couple SPR with mass spectrometry. These methods should be useful for protein-protein interaction mapping. For example, immobilized proteins can be used as hooks for fishing binding partners from complex protein mixtures under native conditions. The coupling of techniques can lead not only to the rapid identification of interacting proteins but will also provide information on the kinetic parameters of the interaction. This approach should serve as an excellent complement to the use of in vivo techniques such as the yeast two-hybrid system. 

Understanding the behavior of organic bases in solution requires some knowledge of their gas phase (intrinsic) basicities (proton affinities (PA)). These can be determined by ICR methods or by variable-temperature pulsed high-pressure mass spectrometry. Both methods afford basicities (termed thermodynamic vs. kinetic basicity), which have been compared in (91JOC179). 

A Our lab is currently very involved in measuring the kinetic constants of possible inhibitors to various enzymes using mass spectrometry. Using a mass spectrometry-based method, we can measure and K-, of enzymes, substrates, and inhibitors... 

Hubicka, U., Zuromska-Witek, B., Zmudzki, R, Maslanka, A., Kwapinska, N., and Krzek, J. 2013. Determination of sparfloxacin and its photodegradation products by thin-layer chromatography with densitometry detection. Kinetic evaluation of the degradation process and identification of photoproduct by mass spectrometry, Anal. Methods, 5 6734-6740. 

In addition to the main general methods of analysis outlined above there are also certain specialised techniques which are applied in special circumstances. Among these are X-ray methods, methods based upon the measurement of radioactivity, mass spectrometry, the so-called kinetic methods, and thermal methods. 

Cl is an efficient, and relatively mild, method of ionization which takes place at a relatively high pressure, when compared to other methods of ionization used in mass spectrometry. The kinetics of the ion-molecule reactions involved would suggest that ultimate sensitivity should be obtained when ionization takes place at atmospheric pressure. It is not possible, however, to use the conventional source of electrons, a heated metallic filament, to effect the initial ionization of a reagent gas at such pressures, and an alternative, such as Ni, a emitter, or a corona discharge, must be employed. The corona discharge is used in commercially available APCI systems as it gives greater sensitivity and is less hazardous than the alternative. 

The impact of an ion beam on the electrode surface can result in the transfer of the kinetic energy of the ions to the surface atoms and their release into the vacuum as a wide range of species—atoms, molecules, ions, atomic aggregates (clusters), and molecular fragments. This is the effect of ion sputtering. The SIMS secondary ion mass spectrometry) method deals with the mass spectrometry of sputtered ions. The SIMS method has high analytical sensitivity and, in contrast to other methods of surface analysis, permits a study of isotopes. In materials science, the SIMS method is the third most often used method of surface analysis (after AES and XPS) it has so far been used only rarely in electrochemistry. 

Fletcher et al. [123] used a sensitive and specific gas chromatography-mass spectrometry method for the assay of primaquine in plasma and urine for studying the plasma kinetics. Preliminary studies on the effects of single and multiple oral doses were carried out. In both cases, the drug was completely removed from plasma in 24 h. The concentration of primaquine in plasma usually reached a peak 1-2 h after oral administration. The plasma elimination half-life was about 4 h. 

Historically, some of those approaches have been developed with a considerable degree of independence, leading to a proliferation of thermochemical concepts and conventions that may be difficult to grasp. Moreover, the past decades have witnessed the development of new experimental methods, in solution and in the gas phase, that have allowed the thermochemical study of neutral and ionic molecular species not amenable to the classic calorimetric and noncalorimetric techniques. Thus, even the expert reader (e.g., someone who works on thermochemistry or chemical kinetics) is often challenged by the variety of new and sophisticated methods that have enriched the literature. For example, it is not uncommon for a calorimetrist to have no idea about the reliability of mass spectrometry data quoted from a paper many gas-phase kineticists ignore the impact that photoacoustic calorimetry results may have in their own field most experimentalists are notoriously unaware of the importance of computational chemistry computational chemists often compare their results with less reliable experimental values and the consistency of thermochemical data is a frequently ignored issue and responsible for many inaccuracies in literature values. 

Secondary isotope effects are small. In fact, most of the secondary deuterium KIEs that have been reported are less than 20% and many of them are only a few per cent. In spite of the small size, the same techniques that are used for other kinetic measurements are usually satisfactory for measuring these KIEs. Both competitive methods where both isotopic compounds are present in the same reaction mixture (Westaway and Ali, 1979) and absolute rate measurements, i.e. the separate determination of the rate constant for the single isotopic species (Fang and Westaway, 1991), are employed (Parkin, 1991). Most competitive methods (Melander and Saunders, 1980e) utilize isotope ratio measurements based on mass spectrometry (Shine et al., 1984) or radioactivity measurements by liquid scintillation (Ando et al., 1984 Axelsson et al., 1991). However, some special methods, which are particularly useful for the accurate determination of secondary KIEs, have been developed. These newer methods, which are based on polarimetry, nmr spectroscopy, chromatographic isotopic separation and liquid scintillation, respectively, are described in this section. The accurate measurement of small heavy-atom KIEs is discussed in a recent review by Paneth (1992). 

---