Intramolecular mechanistic analysis

Intramolecular ene reactions can also be carried out with Lewis acid catalysts. Several examples are included in Scheme 6.15. Mechanistic analysis of Lewis acid-catalyzed reactions indicates they may more closely resemble an electrophilic substitution process related to reactions which will be discussed in Section 10.1.1.210... 

Asymmetric intramolecular carbopalladation is an effective reaction for producing enantioenriched polycycles. Most examples are intramolecular Heck reactions. One seminal example from natural product synthesis is the 5-exo carbopalladation of eneamide 201 to oxindole 202 (after acid treatment) from a total synthesis of ( )-physostigmine 203 (Scheme 31).The reaction occurs in 84% yield with 95% ee, which is remarkably efficient for the construction of a quaternary center. Reaction conditions that favor the neutral manifold of the Heck reaction are employed. Examination of the scope of the oxindole synthesis and mechanistic analysis have appeared. " Group selective reactions are also powerful reactions in carbopalladation asymmetric synthesis.From a synthesis of (+)-vemolepin 206, alkenyl triflate 204 is... 

Fiori KW, Espino CG, Brodsky BH, Du Bois J. A mechanistic analysis of the Rh-catalyzed intramolecular C-H amination reaction. Tetrahedron. 2009 65 3042-3051. 

In order to safely identify k0 with intramolecular carbenic reactions (e.g., k and the formation of alkene 4 in Scheme 1), product analysis should demonstrate that the yield of intramolecular products exceeds 90%, while dimer, azine, and solvent-derived (intermolecular) carbene products should be absent or minimal. If these conditions are not met, mechanistic interpretation is often ambiguous, a result that is well illustrated by the saga of benzylchlorocarbene (see below, Section IV.C). Less desirably, k0 can be corrected for competitive intermolecular carbenic reactions. Bimolecular reactions like dimerization and azine formation can be minimized by working at low carbene precursor concentrations, and careful experimental practice should include quantitative product studies at several precursor concentrations to highlight potential product contamination by intermolecular processes. 

In order to gain more insight into this proposed mechanism, Montgomery and co-workers tried to isolate the intermediate metallacycle. This effort has also led to the development of a new [2 + 2 + 2]-reaction.226 It has been found that the presence of bipyridine (bpy) or tetramethylethylenediamine (TMEDA) makes the isolation of the desired metallacycles possible, and these metallacycles are characterized by X-ray analysis (Scheme 56).227 Besides important mechanistic implications for enyne isomerizations or intramolecular [4 + 2]-cycloadditions,228 the TMEDA-stabilized seven-membered nickel enolates 224 have been further trapped in aldol reactions, opening an access to complex polycyclic compounds and notably triquinanes. Thus, up to three rings can be generated in the intramolecular version of the reaction, for example, spirocycle 223 was obtained in 49% yield as a single diastereomer from dialdehyde 222 (Scheme 56).229... 

DFT calculations have been used to study the mechanistic pathway of the intramolecular Diels-Alder cycloaddition involved in the biosynthesis of natural products paraherquamide A and VM55599. The cycloaddition involves a dihydropyrolo[l,2- ]pyrazine as the azadiene and a standard alkene as the dienophile (Scheme 1). Analysis of the results reveals that these cycloadditions take place through concerted transition structures associated with [4+2]... 

The analysis of 13C integrations in context of different mechanistic models (concerted, biradical or per epoxide) led authors to the conclusion that 13C integration pattern is consistent with the perepoxide model and supports mechanism proposed earlier from 2H KIEs.90 The following intramolecular 13C isotope effects for formation of 43 were calculated from changes of 13C integrations (Figure 18). 

Such analysis is feasible because as a two-centre protein cyt c4 is simple enough for fair mechanistic resolution but still holds the fundamental features of intramolecular ET and other interaction between the heme groups. 

Summary The rich variety of the coordination chemistry of silicon is discussed and some theoretical issues are raised. In an attempt to understand further the underlying chemistry, some thermodynamic and kinetic parameters for the formation and substitution of pentacoordinate silicon compounds have been measured by NMR methods. Values of -31 3 kJ mol for SHand -100 10 J K mor for A5-were measured for the intramolecular coordination of a pyridine ligand to a chlorosilane moiety. A detailed kinetic analysis of a nucleophilic substitution at pentacoordinate silicon in a chelated complex revealed that substitution both with inversion and retention of configuration at silicon are taking place on the NMR time-scale. The substitution with inversion of configuration is zero order in nucleophile but a retentive route is zero order in nucleophile at low temperature but shows an increasing dependence on nucleophile at higher temperatures. These results are analysed and mechanistic hypotheses are proposed. Some tentative conclusions are drawn about the nature of reactivity in pentacoordinate silicon compounds. 

A recent DFT study has shown that retention of configuration observed for the above reactions is in agreement with the insertion of singlet nitrene and a concerted product formation [150 is the transition state for the reaction shown in Equation (6.135)]. Du Bois and coworkers have performed detailed mechanistic investigations of the intramolecular sulfamate ester C-H amination reaction catalyzed by a dirhodium complex. Reactivity patterns, Hammett analysis, and kinetic isotope effect studies have provided support for the concerted, asynchronous transition structure 151. A similar conclusion was arrived at for an analogous intermolecular process. ... 

Gas chromatography-mass spectrometry analysis of the dimer and trimer fractions of the polymerisation products of propene and but-l-ene also suggested intramolecular hydride and methanide shifts as the source of the isomers formed. A mechanistic scheme for the oligomerisation of propene has been proposed, Reaction sequence (2.4) [31]. In most of the studies described above, the products have been analysed after hydrogenation. However, a study analysed the Cy product of a propene/but-l-ene copolymerisation before hydrogenation and confirmed the role of hydride and methanide shifts in determining the structures of the products [32],... 

Treatment of an alkyne/alkene mixture with ruthenium carbene complexes results in the formation of diene derivatives without the evolution of byproducts this process is known as enyne cross-metathesis (Scheme 22). An intramolecular version of this reaction has also been demonstrated, sometimes referred to as enyne RCM. The yield of this reaction is frequently higher when ethylene is added to the reaction mixture. The preferred regiochemistry is opposite for enyne cross-metathesis and enyne RCM. The complex mechanistic pathways of Scheme 22 have been employed to account for the observed products of the enyne RCM reaction. Several experiments have shown that initial reaction is at the alkene and not the alkyne. The regiochemistry of enyne RCM can be attributed to the inability to form highly strained intermediate B from intermediate carbene complex A in the alkene-first mechanism. Enyne metathesis is a thermodynamically favorable process, and thus is not a subject to the equilibrium constraints facing alkene cross-metathesis and RCM. In a simple bond energy analysis, the 7r-bond of an alkyne is... 

Analysis of the structure-reactivity cross-correlations shows the existence of isoparametric relationships in the reactions of Y-substituted benzyl bromides with X-substituted anilines in dioxane and in its mixtures with DMSO at 40 The kinetics of hydrolysis of 1-arylethyl ethers of salicyclic acid, catalysed intramolecularly by 0-CO2H, have been studied. Analysis of substituent effects in both arylethyl and leaving groups provides the most detailed available mechanistic insight into a reaction involving efficient intramolecular proton-transfer catalysis. The mechanism is very different from classical general acid-base catalysis. ... 

The results uncovered by Muller have been corroborated by the subsequent studies from the Du Bois group, particularly with respect to the intramolecular reaction. The stereospecific C(sp )—H insertion of the carbamate-derived nitrene depicted in Scheme 6A was the first relevant reaction in favor of the asynchronous concerted addition.More significantly, the extensive analysis of the rhodium-catalyzed intramolecular C(sp )-H amination of sulfamates has led to the same conclusion. The Hammett analysis (/0= —0.55 vs. and the kinetic isotope effect observed from the monodeuterated phenylpropyl sulfamate 9 (KIE = 2.6 0.2) clearly argue in favor of this mechanistic scenario (Scheme 17). Additionally, the reaction from the cyclopropyl radical clock 12 supports this hypothesis by furnishing a single product isolated with an excellent yield of 91%. 

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