INDO theory

A modified INDO model that is not entirely obsolete is the symmetric orthogonal-ized INDO (SINDOl) model of Jug and co-workers, first described in 1980 (Nanda and Jug 1980). The various conventions employed by SINDOl represent slightly different modifications to INDO theory than those adopted in the MINDO/3 model, but the more fundamental difference is the inclusion of d functions for atoms of the second row in the periodic table. Inclusion of such functions in the atomic valence basis set proves critical for handling hyper-valent molecules containing these atoms, and thus SINDO1 performs considerably better for phosphorus-containing compounds, for instance, than do otlier semiempirical models that lack d functions (Jug and Schulz 1988). 

INDO theory [5a]. The relation between the isotropic chemical shift, or chemical shift tensor, and the structures of various kinds of synthetic copolypeptides in the solid state have been studied. It was found that the chemical shifts indicate strong neighbor sequence effects [5, 6]. 

Theory - INDO Theory - INDO Theory - INDO... 

There is already substantial experimental evidence and theoretical justification for electronic interaction between cyclopropyl and carbonyl groups. A charge-transfer band in the vapour-phase u.v. spectra of several cyclopropyl ketones has been detected at ca. 180 nm (s ca. 4000). The circular dichroism of several optically active cyclopropyl ketones, together with conformational analysis based upon n.m.r. spectroscopy results and INDO theory, has been used to extend the octant rule for such compounds. ... 

A few semiempirical approaches are currently available that may allow treatment of transition metals with efficiency. Two of these fall in the INDO class of HF models. (INDO methods are usually more computationally efficient, though not as accurate, as those based on NDDO theories.) INDO/S developed by Zemer et al. is included in the ZINDO package and has been available for a number of years. It is very successful for the prediction of electronic spectra, for which it was carefully parameterized. However, INDO/S is not usually applied to compute more general properties such as optimized geometries or molecular energies, as it is not deemed to be reliable for these values. SINDOI from Jug et al. has recently been expanded to some transition metal elements and performs as expected within the limited INDO theory used. Again, results are somewhat erratic and the method does not appear to treat open-shell systems with a great deal of success. 

ZINDO/1 IS based on a modified version of the in termediate neglect of differen tial overlap (IXDO), which was developed by Michael Zerner of the Quantum Theory Project at the University of Florida. Zerner s original INDO/1 used the Slater orbital exponents with a distance dependence for the first row transition metals only. Ilow ever. in HyperChein constant orbital expon en ts are used for all the available elein en ts, as recommended by Anderson. Friwards, and Zerner. Inorg. Chem. 2H, 2728-2732.iyH6. 

Highest occupied molecular orbital Intermediate neglect of differential overlap Linear combination of atomic orbitals Local density approximation Local spin density functional theory Lowest unoccupied molecular orbital Many-body perturbation theory Modified INDO version 3 Modified neglect of diatomic overlap Molecular orbital Moller-Plesset... 

Molecular mechanics and semiempirical calculations are all relativistic to the extent that they are parameterized from experimental data, which of course include relativistic effects. There have been some relativistic versions of PM3, CNDO, INDO, and extended Huckel theory. These relativistic semiempirical calculations are usually parameterized from relativistic ah initio results. 

ZINDO/S is an INDO method parameterized to reproduce UV visible spectroscopic transitions when used with the singly excited Cl method. It was developed in the research group of Michael Zerner of the Quantum Theory Project at the University of Florida. 

HyperChem currently supports one first-principle method ab initio theory), one independent-electron method (extended Hiickel theory), and eight semi-empirical SCFmethods (CNDO, INDO, MINDO/3, MNDO, AMI, PM3, ZINDO/1, and ZINDO/S). This section gives sufficient details on each method to serve as an introduction to approximate molecular orbital calculations. For further details, the original papers on each method should be consulted, as well as other research literature. References appear in the following sections. 

Th ere are sim ilar expression s for sym m etry related in tegrals (sslyy), etc. For direct comparison with CNDO, F is computed as in CNDO. The other INDO parameters, and F, are generally obtained [J. I. Slater, Quantum Theory of Atomic Structure, McGraw-Hill Book Company, Vol. 1, New York, I960.] from fits to experimental atomic energy levels, although other sources for these Slater-Con don parameters are available. The parameter file CINDO.ABP contains the values of G and F (columns 9 and 10) in addition to the CNDO parameters. 

Structure. The straiued configuration of ethylene oxide has been a subject for bonding and molecular orbital studies. Valence bond and early molecular orbital studies have been reviewed (28). Intermediate neglect of differential overlap (INDO) and localized molecular orbital (LMO) calculations have also been performed (29—31). The LMO bond density maps show that the bond density is strongly polarized toward the oxygen atom (30). Maximum bond density hes outside of the CCO triangle, as suggested by the bent bonds of valence—bond theory (32). The H-nmr spectmm of ethylene oxide is consistent with these calculations (33). 

More sophisticated procedures involve taking the start MO coefficients from a semi-empirical calculation, such as Extended HUckel Theory (EHT) or Intermediate Neglect of Differential Overlap (INDO) (Sections 3.12 and 3.9). The EHT method has the advantage that it is readily parameterized for all elements, and it can provide start orbitals for systems involving elements from essentially the whole periodic table. An INDO calculation normally provides better start orbitals, but at a price. The INDO... 

The Huckel methods perform the parameterization on the Fock matrix elements (eqs. (3.50) and (3.51)), and not at the integral level as do NDDO/INDO/CNDO. This means that Huckel methods are non-iterative, they only require a single diagonalization of the Fock (Huckel) matrix. The Extended Huckel Theory (EHT) or Method (EHM), developed primarily by Hoffmann again only considers the valence electrons. It makes use of Koopmans theorem (eq. (3.46)) and assigns the diagonal elements in the F... 

The 327-670 GHz EPR spectra of canthaxanthin radical cation were resolved into two principal components of the g-tensor (Konovalova et al. 1999). Spectral simulations indicated this to be the result of g-anisotropy where gn=2.0032 and gi=2.0023. This type of g-tensor is consistent with the theory for polyacene rc-radical cations (Stone 1964), which states that the difference gxx gyy decreases with increasing chain length. When gxx-gyy approaches zero, the g-tensor becomes cylindrically symmetrical with gxx=gyy=g and gzz=gn. The cylindrical symmetry for the all-trans carotenoids is not surprising because these molecules are long straight chain polyenes. This also demonstrates that the symmetrical unresolved EPR line at 9 GHz is due to a carotenoid Jt-radical cation with electron density distributed throughout the whole chain of double bonds as predicted by RHF-INDO/SP molecular orbital calculations. The lack of temperature... 

Two philosophies have emerged in connection with the various semi-empirical methods (for a review, see Klopman and Evans, 1976). In both cases certain matrix elements are assumed to be negligible, others are computed, and others are chosen according to some criteria. According to one philosophy, the chosen parameters should lead to agreement with exact Hartree-Fock theory. Then, if desired, correlation can be added in some form. Methods called CNDO and INDO are examples of this. A more recent development is the partial retention of diatomic differential overlap (PRDDO) method (see Estreicher et al., 1989). 

The term "semi-empirical" has been reserved commonly for electronic-based calculations which also starts with the Schrodinger equation.9-31 Due to the mathematical complexity, which involve the calculation of many integrals, certain families of integrals have been eliminated or approximated. Unlike ab initio methods, the semi-empirical approach adds terms and parameters to fit experimental data (e.g., heats of formation). The level of approximations define the different semi-empirical methods. The original semi-empirical methods can be traced back to the CNDO,12 13 NDDO, and INDO.15 The success of the MINDO,16 MINDO/3,17-21 and MNDO22-27 level of theory ultimately led to the development of AMI28 and a reparameterized variant known as PM3.29 30 In 1993, Dewar et al. introduced SAMI.31 Semi-empirical calculations have provided a wealth of information for practical applications. 

Earlier, [3+ 2]-cycloaddition reactions of nitronates have been described in terms of the FMO theory. For example, French researchers studied reactions of olefins containing EWG groups with nitronates by the FMO—INDO method (248, 338b, 419). Recently, more modem methods have been used for calculations of FMO and the potential energy surfaces for several analogous reactions (87, 399,... 

To confirm equation (4), we used the FPT (Finite Perturbation Theory) INDO (Intermediate Neglect of Differential Overlap) method (39) to calculate the Jqjj for various values of torsion angles. A comparison of the experimental and calculated values is plotted in Figure 5. 

M. R. Silva-Junior and W. Thiel. Benchmark of electronically excited states for semiempirical methods MNDO, AMI, PM3, OMl, OM2, OM3, INDO/S, and INDO/S2, J. Chem. Theory Comput., 6 1546-1564 (2010). 

The simple, or Hiickel based, molecular orbital theory (HMO and PPP methods) frequently provides useful qualitative insights but cannot be used reliably in a quantitative manner. For this purpose it is necessary to use a method which takes account of all the electrons as well as their mutual repulsions. A major bottleneck in such calculations is in the computation and storage of the enormous number of electron-repulsion integrals involved. Early efforts to reduce this problem led Hoffmann to the EH approximation (I.N. Levine, Quantum Chemistry, 4-th ed., 1991, Prentice-Hall, Inc., Ch. 16, 17), and Pople and co-workers to the CNDO, INDO and NDDO-approximations (B-70MI40100). 

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