Site-specific functionalization

Nonrepetitive but well-defined structures of this type form many important features of enzyme active sites. In some cases, a particular arrangement of coil structure providing a specific type of functional site recurs in several functionally related proteins. The peptide loop that binds iron-sulfur clusters in both ferredoxin and high potential iron protein is one example. Another is the central loop portion of the E—F hand structure that binds a calcium ion in several calcium-binding proteins, including calmodulin, carp parvalbumin, troponin C, and the intestinal calcium-binding protein. This loop, shown in Figure 6.26, connects two short a-helices. The calcium ion nestles into the pocket formed by this structure. 

The specificity of biocatalysts also extends to site specificity (regiospecificity). This means that if several functional groups of one type are present on the molecule, only one specific position will be affected. An example of this is the microbial oxidation of D-soibitol to L-soibose, a key step in the synthesis of vitamin C (Figure 2.4). 

Subtilisin, 170 active site of, 171,173 autocorrelation function of, 216, 216 potential surfaces for, 218 site-specific mutations, 184, 185, 187-188 Sugars, see Oligosaccharides Surface-constrained solvent model, 125... 

The antiparallel strand structure between residues 131 and 238 in the cytoplasmic portion of Ca -ATPase was originally designated as transduction domain the name suggested its possible role in the conformational coupling between the nucleotide binding and phosphorylation sites exposed to the cytoplasm and the Ca channel located at some distance from each other in the lipid bilayer [8,42]. The site specific mutagenesis of conserved amino acids in the P strand sector of the molecule provides support for its proposed function in conformational transitions [103,126,127,215]. 

The design of cover systems is site-specific and depends on the intended function of the final cover—components can range from a single-layer system to a complex multilayer system. To minimize percolation, conventional cover systems use low-permeability barrier layers. These barrier layers are often constructed of compacted clay, geomembranes, geosynthetic clay liners, or combinations of these materials. 

Molecular imprinting can be accomplished in two ways (a), the self assembly approach and (b), the preorganisation approach3. The first involves host guest complexes produced from weak intermolecular interactions (such as ionic or hydrophobic interaction, hydrogen bonding) between the analyte molecule and the functional monomers. The self assembled complexes are spontaneously formed in the liquid phase and are sterically fixed by polymerisation. After extraction of the analyte, vacant recognition sites specific for the imprint are established. Monomers used for self assembly are methacrylic acid, vinylpyridine and dimethylamino methacrylate. 

Functionalized Biocompatible Nanoparticles for Site-Specific Imaging and Therapeutics... 

---