Iron proteins, high potential

G Backes, Y Mino, TM Loehr, TE Meyer, MA Cusanovich, WV Sweeny, ET Adman, J Sand-ers-Loehr. The environment of Ee4S4 clusters in ferredoxms and high-potential iron proteins. New information from X-ray crystallography and resonance Raman spectroscopy. J Am Chem Soc 113 2055-2064, 1991. 

Nonrepetitive but well-defined structures of this type form many important features of enzyme active sites. In some cases, a particular arrangement of coil structure providing a specific type of functional site recurs in several functionally related proteins. The peptide loop that binds iron-sulfur clusters in both ferredoxin and high potential iron protein is one example. Another is the central loop portion of the E—F hand structure that binds a calcium ion in several calcium-binding proteins, including calmodulin, carp parvalbumin, troponin C, and the intestinal calcium-binding protein. This loop, shown in Figure 6.26, connects two short a-helices. The calcium ion nestles into the pocket formed by this structure. 

High potential iron protein Photosynthetic bacteria... 

While the oxidation reduction potential of the ferredoxins is —0.2 V to —0.4 V and that of the rubredoxins is about —0.05 V, a protein from the photosynthetic bacterium Chromatium has a redox potential of +0.35 V. This is the high potential iron protein, or HIPIP. 

Three core oxidation states are known for protein-bound [Fe4-S4(S.Cys)4]3+ clusters as illustrated in Figure 2.9. Native proteins exhibit either the [Fe4-S4]2+ + or the [Fe4-S4]3+,2+ redox couple, with proteins involved in the latter couple being referred to historically as HiPIP (high-potential iron protein). The three oxidation states have not been traversed in one protein unless its tertiary structure is significantly perturbed. 

Figure 6.4 Absorption spectrum (A) and CD spectrum (B) of the [Fe4S4] cluster of a high-potential iron protein (HiPIP) from Chromatium sp. (From Cowan, 1997. Reproduced with permission from John Wiley Sons., Inc.)...

By any sort of definition, turns are an important feature of protein structure. Kuntz (1972) found 45% of protein backbone in turns or loops Chou and Fasman (1977) found 32% of protein chain in turns (counting four residues per turn) and Zimmerman and Scheraga (1977b) found 24% of the nonhelical residues in turns (counting only the central dipeptide). There are also some particular proteins whose structure appears heavily dependent on turns Fig. 38 shows high-potential iron protein (Carter et ah, 1974), with the 17 turns in 85 residues indicated and their location at the surface evident. 

Fig. 38. Stereo drawing of the polypeptide backbone of high-potential iron protein. Tight turns are shown with their central peptide as a dark line. The box in the center represents the iron-sulfur cluster.

Domains 1 and 2 doubly wound parallel /3 sheet (Fig. 77) High-potential iron protein (Carter et al., 1974)... 

Fig. 105. Examples of small disulfide-rich or metal-rich proteins (shown on the right side) compared with their more regular counterparts in other structural categories (shown at the left), (a) Tobacco mosaic virus protein, an up-and-down helix bundle (b) cytochrome bs, a distorted up-and-down helix bundle (c) trypsin domain 1, a Greek key antiparallel /3 barrel (d) high-potential iron protein, a distorted Greek key /3 barrel (e) glutathione reductase domain 3, an open-face sandwich fi sheet (f) ferredoxin, a distorted open-face sandwich f) sheet.

Redox Fe-S proteins High-potential iron protein Ferredoxin Viral coat proteins f Tomato bushy stunt virus protein I Southern bean mosaic virus protein Tobacco mosaic virus protein... 

Figure 10. Resonance Raman spectrum of the 4Fe-AS-4Cys cluster In reduced high-potential Iron protein from Rhodopseudomonas globlformls. Spectral conditions as In Figure 9, but spectrum of frozen solvent not subtracted out. (From Mlno, Y. Loehr,...

HIDDEN RETURN High-potential iron protein,... 

Adman, E. T., Watenpaugh, K. D., and Jensen, L. H. (1975). NH---S hydrogen bonds in Peptococcus aerogenes ferrodoxin, Clostridium pasteurianum rubredoxin and Chromatium high potential iron protein. Proc. Natl. Acad. Sci. U.S.A. 72,4854—4858. 

Freer, S. T., Alden, R. A., Carter, C. W., Jr., and Kraut, J. (1975). Crystallographic structure refinement of Chromatium high potential iron protein at two angstroms resolution. /. Biol. Chem. 250, 46-54. 

The multinuclear tetrahedral iron clusters have the potential for additional formal oxidation states. Because not all of these states have been found in proteins or model compounds, it is possible that some oxidation states may be unstable. For a given Fe S protein only one redox couple is used the other possible states appear to be excluded by restrictions of the protein structure. This selection rule is illustrated with two 4Fe 4S low-molecular-weight electron transfer proteins ferredoxin and high-potential iron protein (HiPIP). The 4Fe 4S clusters in both proteins were shown by X-ray crystallography to be virtually identical. However, the redox potential and oxidation states for the two proteins are vastly... 

Fe (2 X 4Fe), Ferredoxins, high-potential iron protein Lovenberg (1973a,b, 1977)... 

High-potential iron proteins, 45 313-314, 344 cluster stability, 45 324-332 function, 45 315-316 residues, 45 322-344 structure and, 45 317-322 redox properties, 45 333-344 solvent accessibility, 45 330, 332-333 source and function, 45 314-316 structure, 45 316-322 hydrogen bonding and, 45 321-322 intermolecular aggregation, 45 322 primary, 45 317-318 secondary and tertiary, 45 318-321... 

Several models have been proposed for the active center of iron and sulphur in Clostridial ferredoxin in which the cysteine residues in the peptide chain participate in the sulphur bridging. Fig 9 166). Unfortunately X-ray analysis of crystals of these proteins has not been completed. It is difficult to confirm that all the irons are clustered in a single linear array 167, 168). X-ray studies of another non-heme iron protein, the high potential iron protein, hipip, from chromatium, carried out by J. Kraut (personal communication), indicate that the four irons of this molecule may be clustered in a tetrahedral array. 

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