Enzyme-catalyzed reactions hydrolysis

Knowing how the protein chain is folded is a key ingredient m understanding the mechanism by which an enzyme catalyzes a reaction Take carboxypeptidase A for exam pie This enzyme catalyzes the hydrolysis of the peptide bond at the C terminus It is... 

Enzymes are powerful catalysts. Enzyme-catalyzed reactions are typically 10 to times faster than their uncatalyzed counterparts (Table 16.1). (There is even a report of a rate acceleration of >10 for the alkaline phosphatase-catalyzed hydrolysis of methylphosphate )... 

Instead of immobilizing the antibody onto the transducer, it is possible to use a bare (amperometric or potentiometric) electrode for probing enzyme immunoassay reactions (42). In this case, the content of the immunoassay reaction vessel is injected to an appropriate flow system containing an electrochemical detector, or the electrode can be inserted into the reaction vessel. Remarkably low (femtomolar) detection limits have been reported in connection with the use of the alkaline phosphatase label (43,44). This enzyme catalyzes the hydrolysis of phosphate esters to liberate easily oxidizable phenolic products. 

The interest and success of the enzyme-catalyzed reactions in this kind of media is due to several advantages such as (i) solubilization of hydrophobic substrates (ii) ease of recovery of some products (iii) catalysis of reactions that are unfavorable in water (e.g. reversal of hydrolysis reactions in favor of synthesis) (iv) ease of recovery of insoluble biocatalysts (v) increased biocatalyst thermostability (vi) suppression of water-induced side reactions. Furthermore, as already said, enzyme selectivity can be markedly influenced, and even reversed, by the solvent. 

Hydrolase enzymes catalyze the hydrolysis of a substrate and are most commonly coupled with potentiometericela trodes The pioneering work in this field focussed on de loping an enzyme electrode for the determination of urea. Urease catalyzes the hydrolysis of urea to ammonium and bicarbonate ions according to the reaction detailed below. 

Despite the diverse range of documented enzyme-catalyzed reactions, there are only certain types of transformations that have thus far emerged as synthetically useful. These reactions are the hydrolysis of esters, reduction/oxidation reactions, and the formation of carbon-carbon bonds. The first part of this chapter gives a brief overview by describing some examples of various biotransformations that can easily be handled and accessed by synthetic organic chemists. These processes are now attracting more and more attention from nonspecialists of enzymes. 

Biocatalytic hydrolysis or transesterification of esters is one of the most widely used enzyme-catalyzed reactions. In addition to the kinetic resolution of common esters or amides, attention is also directed toward the reactions of other functional groups such as nitriles, epoxides, and glycosides. It is easy to run these reactions without the need for cofactors, and the commercial availability of many enzymes makes this area quite popular in the laboratory. 

Quantitative measurements of simple and enzyme-catalyzed reaction rates were under way by the 1850s. In that year Wilhelmy derived first order equations for acid-catalyzed hydrolysis of sucrose which he could follow by the inversion of rotation of plane polarized light. Berthellot (1862) derived second-order equations for the rates of ester formation and, shortly after, Harcourt observed that rates of reaction doubled for each 10 °C rise in temperature. Guldberg and Waage (1864-67) demonstrated that the equilibrium of the reaction was affected by the concentration ) of the reacting substance(s). By 1877 Arrhenius had derived the definition of the equilbrium constant for a reaction from the rate constants of the forward and backward reactions. Ostwald in 1884 showed that sucrose and ester hydrolyses were affected by H+ concentration (pH). 

Applications of chemical kinetics to enzyme-catalyzed reactions soon followed. Because of the ease with which its progress could be monitored polarimetrically, enzyme hydrolysis of sucrose by invertase was a popular system for study. O Sullivan and Tompson (1890) concluded that the reaction obeyed the Law of Mass Action and in a paper entitled, Invertase A Contribution to the History of an Enzyme or Unorganized Ferment , they wrote [Enzymes] possess a life function without life. Is there anything [in their actions] which can be distinguished from ordinary chemical action ... 

Korman, E. F., Me Lick, J. Stereochemical reaction mechanism formulations for enzyme-catalyzed pyrophosphate hydrolysis, ATP hydrolysis, and ATP synthesis. Bioorganic Chem. 2, 179—190 (1973). 

Many of the 60 known reactions catalyzed by monoclonal antibodies involve kinetically favored reactions e.g., ester hydrolysis), but abzymes can also speed up kinetically disfavored reactions. Stewart and Benkovic apphed transition-state theory to analyze the scope and limitations of antibody catalysis quantitatively. They found the observed rate accelerations can be predicted from the ratio of equilibrium binding constants of the reaction substrate and the transition-state analogue used to raise the antibody. This approach permitted them to rationalize product selectivity displayed in antibody catalysis of disfavored reactions, to predict the degree of rate acceleration that catalytic antibodies may ultimately afford, and to highlight some differences between the way that they and enzymes catalyze reactions. 

Exchange-inert complexes of Cr(III) with nucleotide ligands are very stable toward hydrolysis. Such complexes have proven to be extremely useful as chirality probes in that different coordination isomers can be prepared and separated These nucleotide complexes have also proved useful as dead-end inhibitors of enzyme-catalyzed reactions. Because Cr(lII) is paramagnetic, distances can be measured by measuring the effects of Cr(lll) on the NMR signals of nearby atoms when the Cr(lll)-nucleotide complex binds to the surface of a mac-romolecule. See Exchange-Inert Complexes... 

C. A. Vernon, Mechanisms of hydrolysis of glycosides and their relevance to enzyme-catalyzed reactions, Proc. R. Soc. Lond. B Biol. Sci., 167 (1967) 389—401. 

Kinetic resolutions by means of the selective formation or hydrolysis of an ester group in enzyme-catalyzed reactions proved to be a successful strategy in the enantioseparation of 1,3-oxazine derivatives. Hydrolysis of the racemic laurate ester 275 in the presence of lipase QL resulted in formation of the enantiomerically pure alcohol derivative 276 besides the (23, 3R)-enantiomer of the unreacted ester 275 (Equation 25) <1996TA1241 >. The porcine pancreatic lipase-catalyzed acylation of 3-(tu-hydroxyalkyl)-4-substituted-3,4-dihydro-2/7-l,3-oxazines with vinyl acetate in tetrahydrofuran (THF) took place in an enantioselective fashion, despite the considerable distance of the acylated hydroxy group and the asymmetric center of the molecule <2001PAC167, 2003IJB1958>. 

Biphasic systems have been effectively used in several enzyme-catalyzed reactions, including peptide and alkyl glycosides synthesis, esterification and transesterification, alcoholysis, hydrolysis, and enantiomeric resolution [2, 24, 60]. Although application of this particular bioconversion system has been used for final products, it is mostly used in the production of intermediate compounds, particularly optically active ones, that can be used as building blocks in the pharmaceutical and food sectors [61-64]. Updated reviews have addressed this matter [2, 4, 24, 60-63], and examples of some representative recent applications of this methodology are given in Table 8.1). 

Phosphonates have been widely used as analogues of carboxylic acids. They have been particularly effective as analogues of tetrahedral transition states that occur in the course of enzyme-catalyzed reactions such as hydrolysis of the amide (peptide) bond. As such, they may be used as inhibitors of enzymes (e.g., 82, 83) or as haptens for producing antibodies that are catalytic (e.g., 84). A notable example is H203P— CH2—CH2—CH(—NH2)—COOH, which has effects that are likely to be due to its interference with glutamate as a neurotransmitter (85). 

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