DNA templating

FIGURE 28 10 During transcription a molecule of mRNA is assembled from a DNA template Transcription begins at a promoter sequence and proceeds in the 5 3 direction of the mRNA until a termination sequence of the DNA is reached Only a region of about 10 base pairs is unwound at any time... 

Transcription (Section 28 11) Construction of a strand of mRNA complementary to a DNA template Transfer RNA (tRNA) (Section 28 11) A polynucleotide of n hose that is bound at one end to a unique amino acid This ammo acid is incorporated into a growing peptide chain Transition state (Section 3 1) The point of maximum energy in an elementary step of a reaction mechanism Translation (Section 28 12) The reading of mRNA by van ous tRNAs each one of which is unique for a particular ammo acid... 

Fig. 6. Polymerase chain reaction (PCR) mediated site-directed mutagenesis. The 5 and 3 ends of the nucleotide strands are indicated. The four arrows surrounding the DNA template represent oligonucleotide primers 1—4. See text for discussion.

Section 28.11 Three RNAs are involved in gene expression. In the transcription phase, a strand of messenger RNA (mRNA) is synthesized from a DNA template. The four bases A, G, C, and U, taken three at a time, generate 64 possible combinations called codons. These 64 codons comprise the genetic code and code for the 20 anino acids found in proteins plus start and stop signals. The mRNA sequence is translated into a prescribed protein sequence at the ribosomes. There, small polynucleotides called... 

Transcription (Section 28.11) Construction of a strand of mRNA complementary to a DNA template. 

Nielsen P. E., Egholm M., Buchardt O. Sequence-specific transcription arrest by peptide nucleic acid bound to the DNA template strand. Gene 1994 149 139-145. 

FIG. 3 Condensed DNA particle assembly using template polymerization of cations, (a) Principle of DNA condensation by counterion polymerization on DNA template (b) chemistry of polycation formation (c) e microscopy of condensed DNA particles, bar =100 nm. [(c) was reprinted from Ref. 97, copyright 1998 Oxford University Press.]... 

Much of the RNA synthesized from DNA templates in eukaryotic cells, including mammalian cells, is degraded within the nucleus, and it never serves as either a strucmral or an informational entity within the cellular cytoplasm. 

Transcription continues into the AT region, and with the aid of the p termination protein the RNA polymerase stops, dissociates from the DNA template, and releases the nascent transcript. 

The formation of the PIC described above is based on the sequential addition of purified components in in vitro experiments. An essential feature of this model is that the assembly takes place on the DNA template. Accordingly, transcription activators, which have autonomous DNA binding and activation domains (see Chapter 39), are thought to function by stimulating either PIC formation or PIC function. The TAF coactivators are viewed as bridging factors that communicate between the upstream activators, the proteins associated with pol II, or the many other components of TFIID. This view, which assumes that there is stepwise assembly of the PIC—promoted by various interactions between activators, coactivators, and PIC components— is illustrated in panel A of Figure 37-10. This model was supported by observations that many of these proteins could indeed bind to one another in vitro. 

All steps—from changes in DNA template, sequence, and accessibility in chromatin to RNA stability—are subject to modulation and hence are potential control sites for eukaryotic gene regulation. 

A tandem enzymatic aldol-intramolecular Homer-Wadsworth-Emmons reaction has been used in the synthesis of a cyclitol.310 The key steps are illustrated in Scheme 8.33. The phosphonate aldehyde was condensed with dihydroxyacetone phosphate (DHAP) in water with FDP aldolase to give the aldol adduct, which cyclizes with an intramolecular Horner-Wadsworth-Emmons reaction to give the cyclo-pentene product. The one-pot reaction takes place in aqueous solution at slightly acidic (pH 6.1-6.8) conditions. The aqueous Wittig-type reaction has also been investigated in DNA-templated synthesis.311... 

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