Degradation mass spectrometry

Pikromycin. Pikromycin (19, R = OH, R = H), the first macroHde discovered (77,78), is produced by S.felleus. Pikromycin is identical to amaromycin and albomycetin (79—81) and may be identical to proactinomycin (82—84). The stmcture of pikromycin was deterrnined from chemical degradation, mass spectrometry, nmr, and x-ray crystallography (85—90). Its aglycone, pikronoHde (20, R = OH), was produced by S. vene elae (36). A derivative, kromycin (22, R = OH), was formed from pikromycin under acidic conditions (87,88,91) and more drastic conditions produced an intramolecular spHoketal of pikronoHde named kromin (89,91). 10,11 -Oihydropikromycin (21, R = OH, R = H), was also produced by S. vene elae (92). 

A classic procedure in the chemical study of alkaloids includes extraction from a plant or animal source, chemical isolation and purification of the active principal, elucidation of the molecular formula by means of chemical degradation, mass spectrometry, infrared, ultraviolet, and nuclear magnetic resonance analyses, and laboratory synthesis of the product. Serious diffi-... 

Joo SH, Xiao Q, Ling Y, Gopishetty B, Pei D. High-throughput sequence determination of cyclic peptide library members by partial edman degradation/mass spectrometry. J. Am. Chem. Soc. 

Time-resolved recording of pyrolysate spectra, sometimes referred to as a linear programmed thermal degradation mass spectrometry (LPTDMS), by... 

Figure 3 Third dimension in pyrolysis mass spectrometry approaches (A) linear programmed thermal degradation mass spectrometry [LPTDMS - third dimension = temperature] (B) collisionally activated dissociation of parent ions coupled with scanning of product ions using tandem mass spectrometry [MS/ MS - third dimension = spectrum of product ions] (C) laser microprobe mass analyser [LAMMA - third dimension = spatial resolution].

Laser desorption is commonly used for pyrolysis/mass spectrometry, in which small samples are heated very rapidly to high temperatures to vaporize them before they are ionized. In this application of lasers, very small samples are used, and the intention is not simply to vaporize intact molecules but also to cause characteristic degradation. 

Environment. Detection of environmental degradation products of nerve agents directly from the surface of plant leaves using static secondary ion mass spectrometry (sims) has been demonstrated (97). Pinacolylmethylphosphonic acid (PMPA), isopropylmethylphosphonic acid (IMPA), and ethylmethylphosphonic acid (EMPA) were spiked from aqueous samples onto philodendron leaves prior to analysis by static sims. The minimum detection limits on philodendron leaves were estimated to be between 40 and 0.4 ng/mm for PMPA and IMPA and between 40 and 4 ng/mm for EMPA. Sims analyses of IMPA adsorbed on 10 different crop leaves were also performed in order to investigate general apphcabiflty of static sims for... 

Because of the complexity of the polyether antibiotics tittle progress has been made in stmcture determination by the chemical degradation route. X-ray methods were the techniques most successfully applied for the early stmcture elucidations. Monensin, X206, lasalocid, lysocellin, and salinomycin were included in nineteen distinct polyether x-ray analyses reported in 1983 (190). Use of mass spectrometry (191), and H (192) and nmr (141) are also reviewed. More recently, innovative developments in these latter techniques have resulted in increased applications for stmcture determinations. Eor example, heteronuclear multiple bond connectivity (hmbc) and homonuclear Hartmann-Hahn spectroscopy were used to solve the stmcture of portimicin (14) (193). East atom bombardment mass spectrometry was used in solving the stmctures of maduramicin alpha and co-factors (58). 

The recent development and comparative application of modern separation techniques with regard to determination of alkylphosphonic acids and lewisite derivatives have been demonstrated. This report highlights advantages and shortcomings of GC equipped with mass spectrometry detector and HPLC as well as CE with UV-Vis detector. The comparison was made from the sampling point of view and separation/detection ability. The derivatization procedure for GC of main degradation products of nerve agents to determine in water samples was applied. Direct determination of lewisite derivatives by HPLC-UV was shown. Also optimization of indirect determination of alkylphosphonic acids in CE-UV was developed. Finally, the new instrumental development and future trends will be discussed. 

The degradation of 2,6-xylenol (2,6-dimethylphenol) by bacteria produces a metabolite with elemental composition C8///0O2 as determined by high-resolution mass spectrometry Which carbon skeleton and which relative configuration are deducible from the NMR experiments 44, all obtained from one 1.5 mg sample ... 

This tool has been of great value in the elucidation of the structures of some important biologically-derived amino (14) and deoxy (13) sugars in the form of their dialkyl dithioacetals. Tedious degradation reactions which would require both time and valuable material could be avoided in many cases by resorting to mass spectrometry. The antibiotic sugars (22) paramose (1), mycinose (2) and chalcose (3) were, for example, studied by mass spectrometry (13, 14). 

With the identities and amounts of amino acids known, the peptide is sequenced to find out in what order the amino acids are linked together. Much peptide sequencing is now done by mass spectrometry, using either electrospray ionization (ESI) or matrix-assisted laser desorption ionization (MALDI) linked to a time-of-flight (TOF) mass analyzer, as described in Section 12.4. Also in common use is a chemical method of peptide sequencing called the Edman degradation. 

Like peptide oligomers, peptoids can be analyzed by HPLC and by mass spectrometry. They can be sequenced by Fdman degradation [13] or by tandem mass spectrometry [14] since, like polypeptides, they conveniently fragment along the main chain amides [15, 16]. 

An environmental protocol has been developed to assess the significance of newly discovered hazardous substances that might enter soil, water, and the food chain. Using established laboratory procedures and C-labeled 2,3,7,8-tetra-chlorodibenzo-p-dioxin (TCDD), gas chromatography, and mass spectrometry, we determined mobility of TCDD by soil TLC in five soils, rate and amount of plant uptake in oats and soybeans, photodecomposition rate and nature of the products, persistence in two soils at 1,10, and 100 ppm, and metabolism rate in soils. We found that TCDD is immobile in soils, not readily taken up by plants, subject to photodecomposition, persistent in soils, and slowly degraded in soils to polar metabolites. Subsequent studies revealed that the environmental contamination by TCDD is extremely small and not detectable in biological samples. 

Herbach, K.M., Stintzing, E.C., and Carle, R., Identification of heat-induced degradation products from purified betanin, phyUocactin and hylocerenin by high-performance liquid chromatography/electrospray ionization mass spectrometry, Rapid Commun. Mass Spectrom., 19, 2603, 2005 20, 1822, 2006. 

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