Cytidine 5 - , isolation

Cytosine was isolated from hydrolysis of calf thymus in 1894 and by 1903 its structure was known and it had been synthesized from 2-ethylthiopyrimidin-4(3H)-one. The acid hydrolysis of ribonucleic acid gives nucleotides, among which are two cytidylic acids, 2 -and 3 -phosphates of cytidine further hydrolysis gives cytidine itself, i.e. the 1-/3-D-ribofuranoside of cytosine, and thence cytosine. The deoxyribonucleic acids likewise yield deoxyribonucleotides, including cytosine deoxyribose-5 -phosphate, from which the phosphate may be removed to give cytosine deoxyriboside and thence cytosine. 

If it is desired to isolate only the pyrimidine nucleosides, hydrolysis of the nucleic acid may be carried out in acid medium.6 This process, however, entails extensive deamination of cytidine to uridine. The pyrimidine... 

If polyribonucleotides are treated simultaneously with methoxylamine and bisulphite, cytidine residues are converted into 5,6-dihydro-7V4-methoxycytidine-6-sulphonate,154 and uridine into 5,6-dihydrouridine-6-sulphonate.155 Treatment with dilute ammonia regenerates the uridine residues, leaving the dihydrocytidine derivatives unaffected. When only the cytidine residues have been derivatized, pancreatic ribonuclease becomes uridyl ribonuclease, since it is unable to cleave the chain on the 3 -side of the modified cytidine.154 This allows the isolation of blocks of modified cytidine residues. T2 ribonuclease may also be used. Alternatively, a ribonuclease from Physarum polycephalum has been found to hydrolyse CpX links very slowly, allowing the isolation of cytidine blocks.156 If both uridine and cytidine residues are modified, T2 ribonuclease acts as puryl ribonuclease, allowing the isolation of cumulative blocks of pyrimidines.155 This ability to alter the specificity of nuclease cleavage is a useful tool in sequence analysis. 

The most important pyrimidine derivatives are those upon which biological organisms depend. Cytosine 1018 and uracil 1019 are found in ribonucleic acid (RNA) in the form of their ribonucleotides, cytidine 1020 and uridine 1021, while in deoxyribonucleic acid (DNA), cytosine and thymine 1022 are found in the form of their 2 -deoxyribonucleotides, 2 -deoxycytidine 1023 and thymidine 1024. 5-Methylcytosine 1025 is also found to a small extent (c. 5%) in human DNA in the form of its 2 -deoxyriboside 1026, and 5-(hydroxymethyl)cytosine-2 -deoxyriboside 1027 has also been detected in smaller amounts <2005CBI1>. Many variants of cytosine and uracil can be found in RNA including orotic acid 1028 in the form of its ribonucleotide orotidine 1029. Other pyrimidine derivatives to have been isolated from various biological sources include 2 -deoxyuridine 1030, alloxan 1031, and toxopyrimidine (pyramine) 1032 (Figure 2). 

The derivative (9) of 3,6-dideoxy-a-D-xyIo-hexopyranose (abequose) was isolated from a strain of Salmonella typhimurium,16 that (10) of 3,6-dideoxy-a-D-nfco-hexopyranose (paratose) from Salmonella paratyphi,54 and a mixture of 10 and the ester (11) of 3,6-dideoxy-a-D-arabino-hexopyranose (tyvelose) from Salmonella enteritidis.,6 It was shown that these derivatives are formed from cytidine 5 -(a-D-glu-copyranosyl pyrophosphate) by treatment with nicotinamide adenine dinucleotide (NAD+) and reduced nicotinamide adenine dinucleotide phosphate (NADPH) in the presence of cell extracts of the respective bacterial strain. For example, formation of 9 is characteristic of preparations from Salmonella, group B,55,56 or Pasteurella pseudotuberculosis, type II.56 The derivative 10 was obtained with extracts of Salmonella, group A,56 and Pasteurella pseudotuberculosis, type I and III,56 and a mixture of 10 and 11 with those of Salmonella, group D,55-60 or Pasteurella pseudotuberculosis, type IV 56.59,60 Under similar conditions, the ester (12) of cytidine 5 -pyro-... 

The N-acetylneuraminic acid derivative 44 is widely distributed. It was isolated from a strain182 of Escherichia coli, and has been obtained from cytidine 5 -triphosphate and N-acetylneuraminic acid by the action of enzyme preparations from Neisseria meningitidis183 and from animal tissues.184-186 The latter enzyme can also make use of N-glycolylneuraminic acid as a substrate, to give the respective cytidine 5 -phosphate derivative. 

The structure of an unusual compound isolated from spores of Ustilago avenue46 has not yet been completely clarified. According to data available,189 it seems to be a cytidine 5 -(D-glucosyl phosphate) derivative having a peptide chain attached to a hydroxyl group of the D-ribose residue. 

As early as 1954, cytidine 5 -(L-ribitol 1-pyrophosphate) (46) was found in extracts of Lactobacillus arabinosus,191 and its structure was soon established.192,193 It has been isolated from many other... 

Candida utilis is grown to high biomass concentrations and the extracted RNA is subsequently hydrolysed into the four 5 nucleotides adenosine 5 -monophosphate (AMP), GMP, cytidine and uridine 5 -monophosphate by crude nuclease PI from Penicillium the desired nucleotides are isolated by ion-exchange chromatography and AMP is converted to IMP by adenyl deaminase from Aspergillus [22, 36]. 

An example of a successful application of affinity chromatography is the isolation of the enzyme cytidine deaminase from cells of E. coli. Cytidine was linked covalently via long spacer arms to the agarose beads as in the following diagram ... 

Figure 7. Daughter ion spectrum from the m/z 134 anion isolated from the tetranucleotide deoxy(adenosine-guanosine-cytidine-thymidine). Ions were generated by laser desorption from a direct insertion probe.

To monitor tumor response to capecitabine therapy noninvasively, Zheng and co-workers, from the Indiana University School of Medicine, developed the synthesis of the fluorine- 18-labeled capecitabine as a potential radiotracer for positron emission tomography (PET) imaging of tumors.28 Cytosine (20) was nitrated at the C-5 position with nitric acid in concentrated sulfuric acid at 85°C, followed by neutralization to provide 5-nitrocytosine (27) in moderate yield. This nitro pyrimidine was then carried through the glycosylation and carbamate formation steps, as shown in the Scheme below, to provide the 6/s-protected 5-nitro cytidine 28 in 47% for the three-step process. Precursor 28 was then labeled by nucleophilic substitution with a complex of 18F-labeled potassium fluoride with cryptand Kryptofix 222 in DMSO at 150 °C to provide the fluorine-18-labe led adduct. This intermediate was not isolated, but semi-purified and deprotected with aqueous NaOH in methanol to provide [l8F]-capecitabine in 20-30% radiochemical yield for the 3-mg-scale process. The synthesis time for fluorine-18 labeled capecitabine (including HPLC purification) from end of bombardment to produce KI8F to the final formulation of [18F]-1 for in vivo studies was 60-70 min. 

Cyt(5-4)Pyo, and the riboside of pyrimidone-2 with cytidine 10,88,89), Cyd(5-4)Pdo (top left, Scheme 9). These photoadducts are of considerable biological interest, in that they have been isolated not only from UV-irradiated cytidine and poly(C)10), but are also formed by irradiation at 335 nm of certain tRNA s 90,91>. 

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