Conformational structures pressure

Isolation of Conformational Structures by Varying Applied Pressure... 

It is possible to perform the numerical integration in Eq. [26] during the course of a molecular simulation. The integration variable X can be a thermodynamic variable, such as temperature or pressure, or nonphysical variables that may be used to introduce conformational, structural, or mutational changes in the... 

The first term on the right is the common inverse cube law, the second is taken to be the empirically more important form for moderate film thickness (and also conforms to the polarization model, Section XVII-7C), and the last term allows for structural perturbation in the adsorbed film relative to bulk liquid adsorbate. In effect, the vapor pressure of a thin multilayer film is taken to be P and to relax toward P as the film thickens. The equation has been useful in relating adsorption isotherms to contact angle behavior (see Section X-7). Roy and Halsey [73] have used a similar equation earlier, Halsey [74] allowed for surface heterogeneity by assuming a distribution of Uq values in Eq. XVII-79. Dubinin s equation (Eq. XVII-75) has been mentioned another variant has been used by Bonnetain and co-workers [7S]. 

The thermodynamic analysis of conformational and structural transformations in the melt at high pressures34 showed that the free volume and free energy minimum required for hydrostatic compression is attained as a result of the transition of the molecules in the melt into a more extended conformation (gauche —> trans transitions) since the extended molecules ensure a more compact packing of the chains at compression. Chain uncoiling leads to a decrease in their flexibility parameter f with increasing pressure p ... 

This is, for instance, the case of PTFE, which at atmospheric pressure presents two reversible first-order transitions at 19 °C and 30 °C [67], In the transition at 19 °C the molecular conformation changes slightly, from a 13/6 to a 15/7 helix and the molecular packing changes from an ordered structure with a triclinic unit cell (corresponding to a positioning of the chain axes nearly hexagonal) toward a partially disordered structure (partial intermolecular rotational disorder) with a... 

The quantity of primary interest in our thermodynamic construction is the partial molar Gibbs free energy or chemical potential of the solute in solution. This chemical potential reflects the conformational degrees of freedom of the solute and the solution conditions (temperature, pressure, and solvent composition) and provides the driving force for solute conformational transitions in solution. For a simple solute with no internal structure (i.e., no intramolecular degrees of freedom), this chemical potential can be expressed as... 

Polypeptide chains exist in an equilibrium between different conformations as a function of environment (solvent, other solutes, pH) and thermodynamic (temperature, pressure) conditions. If a polypeptide adopts a structurally ordered, stable conformation, one speaks of an equilibrium between a folded state, represented by the structured, densely populated conformer, and an unfolded state, represented by diverse, sparsely populated conformers. Although this equilibrium exists for polypeptide chains of any size, its thermodynamics and kinetics are typically different for oligopeptides and proteins. This can be broadly explained with reference to the different dimensionalities of the free-energy hypersurfaces of these two types of molecules. 

The present volume deals with the properties of dienes, described in chapters on theory, structural chemistry, conformations, thermochemistry and acidity and in chapters dealing with UV and Raman spectra, with electronic effects and the chemistry of radical cations and cations derived from them. The synthesis of dienes and polyenes, and various reactions that they undergo with radicals, with oxidants, under electrochemical conditions, and their use in synthetic photochemistry are among the topics discussed. Systems such as radialenes, or the reactions of dienes under pressure, comprise special topics of these functional groups. 

A sensitive probe of electrostatic interactions in the distal pocket is provided by the structural and vibrational properties of the Fe-CO unit [9], The bound CO ligand exhibits three main infrared (IR) absorption bands, denoted Ao, A, and A3, with vibrational frequencies 1965 cm-1, 1949 cm, and 1933 cm, respectively. These bands, which change relative intensity and wave-number depending on temperature, pressure, pH, or solvent [10], are used to identify functionally different conformational substrates of MbCO, denoted taxonomic substates [11], Nevertheless the relationship between the A states and specific structural features of the protein has not yet been clarified. 

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