Amino acid residues oxidized

Oxidation is conducted in an acidic medium, usually an acetate or acetate-formate buffer, by using a controlled amount of NBS. Side reactions usually encountered with NBS and proteins, such as oxidation of methionine, cysteine, cystine, histidine and tyrosine, have been generally assumed to be minimal and not to interfere with the tryptophan determination. Experiments with model compounds confirm that the reactivity toward NBS of tryptophan is much higher than that of other amino acid residues. Oxidation of residues other than tryptophan is revealed by increased consumption of NBS by the protein. Usually, 2-4 equivalents of reagent are needed for complete oxidation of tryptophan, but with some proteins, an excess of up to 20 equivalents may be needed (230, 372,374). Some proteins possess tryptophan residues which react very slowly or not at all under the usual conditions of assay the reaction should then be carried out in 8 M urea. 

Pregnenolone is transported from the mitochondria to the ER, where a hydroxyl oxidation and migration of the double bond yield progesterone. Pregnenolone synthesis in the adrenal cortex is activated by adrenocorticotropic hormone (ACTH), a peptide of 39 amino acid residues secreted by the anterior pituitary gland. 

The aldehyde oxidoreductase from Desulfovibrio gigas shows 52% sequence identity with xanthine oxidase (199, 212) and is, so far, the single representative of the xanthine oxidase family. The 3D structure of MOP was analyzed at 1.8 A resolution in several states oxidized, reduced, desulfo and sulfo forms, and alcohol-bound (200), which has allowed more precise definition of the metal coordination site and contributed to the understanding of its role in catalysis. The overall structure, composed of a single polypeptide of 907 amino acid residues, is organized into four domains two N-terminus smaller domains, which bind the two types of [2Fe-2S] centers and two much larger domains, which harbor the molybdopterin cofactor, deeply buried in the molecule (Fig. 10). The pterin cofactor is present as a cytosine dinucleotide (MCD) and is 15 A away from the molecular surface,... 

The introduction of redox activity through a Co11 center in place of redox-inactive Zn11 can be revealing. Carboxypeptidase B (another Zn enzyme) and its Co-substituted derivative were oxidized by the active-site-selective m-chloroperbenzoic acid.1209 In the Co-substituted oxidized (Co111) enzyme there was a decrease in both the peptidase and the esterase activities, whereas in the zinc enzyme only the peptidase activity decreased. Oxidation of the native enzyme resulted in modification of a methionine residue instead. These studies indicate that the two metal ions impose different structural and functional properties on the active site, leading to differing reactivities of specific amino acid residues. Replacement of zinc(II) in the methyltransferase enzyme MT2-A by cobalt(II) yields an enzyme with enhanced activity, where spectroscopy also indicates coordination by two thiolates and two histidines, supported by EXAFS analysis of the zinc coordination sphere.1210... 

Oxidative bleaching of wool is invariably carried out with hydrogen peroxide. The active species involved is likely to be the same as on cellulosic substrates but specific reactions with wool amino acid residues must be considered. The primary reaction is oxidation of cystine disulphide bonds leading to the formation of cysteic acid residues (Scheme 10.41). The rupture of disulphide crosslinks, with attendant increase in urea-bisulphite and alkali solubility values, adversely affects fibre properties. As the severity of bleaching conditions increases, the urea-bisulphite solubility remains little changed but the relationships between alkali solubility and cysteic acid (Figure 10.36) and between cystine and cysteic acid (Figure... 

The significance of protein oxidation became paramount with the advent of recombinant protein biologies used as human therapeutics. Careful characterization of protein stability is essential to maintaining the efficacy of protein pharmaceuticals. If even a single side chain amino acid residue becomes oxidized, then a protein therapeutic may not have the same activity in vivo as the unmodified protein. 

Sodium periodate also may affect tryptophan residues in some proteins. The oxidation of tryptophan can result in activity losses if the amino acid is an essential component of the active site. For instance, avidin and streptavidin may be severely inactivated by treatment with periodate, since tryptophan is important in forming the biotin-binding pocket. In addition, many other amino acid residues are susceptible to oxidation by periodate (Chapter 1, Section 1.1). Limiting the time of oxidation is important to restricting oxidation to diol groups while not affecting other protein structures. 

Obelin is a Ca2+-activated bioluminescent photoprotein that has been isolated from the marine polyp Obelia longissima. Binding of calcium ions determines a luminescent emission. The protein consists of 195 amino acid residues [264] and is composed of apoobelin, coelenterazine, and oxygen. As aequorin, it contains three EF-hand Ca2+-binding sites and the luminescent reaction may be the result of coelenterazine oxidation by way of an intramolecular reaction that produces coelenteramide, C02, and blue light. As for aequorin, the luminescent reaction of obelin is sensitive to calcium and the protein was used in the past as an intracellular Ca2+ indicator. More recently, the cloning of cDNA for apoobelin led to the use of recombinant obelin as a label in different analytical systems. 

Although metal-catalyzed protein oxidation is undoubtedly a very effective oxidative process, the origin of free metal ions under in vivo conditions is still uncertain (see Chapter 21). However, protein oxidation can probably be initiated by metal-containing enzymes. Mukhopadhyay and Chatterjee [31] have shown that NADPH-stimulated oxidation of microsomal proteins was mediated by cytochrome P-450 and occurred in the absence of free metal ions. It is important that in contrast to metal ion-stimulated oxidation of proteins, ascorbate inhibited and not enhanced P-450-dependent protein oxidation reacting with the oxygenated P-450 complex. The following mechanism of P-450-dependent oxidation of the side chain protein amino acid residues has been proposed ... 

HOCl-mediated protein oxidation accelerates under pathophysiological conditions. Thus, proteins from extracellular matrix obtained from advanced human atherosclerotic lesions contained the enhanced levels of oxidized amino acids (DOPA and dityrosine) compared to healthy arterial tissue [44], It was also found that superoxide enhanced the prooxidant effect of hypochlorite in protein oxidation supposedly by the decomposition of chloramines and chlor-amides forming nitrogen-centered free radicals and increasing protein fragmentation [45], In addition to chlorination, hypochlorite is able to oxidize proteins. The most readily oxidized amino acid residue of protein is methionine. Methionine is reversibly oxidized by many oxidants including hypochlorite to methionine sulfide and irreversibly to methionine sulfone [46] ... 

In contrast to nucleic acids, which can be repaired after oxidative damage by excision and insertion mechanisms (see Chapter 28), the repair of oxidized proteins does not occur except the oxidized sulfur-containing amino acid residues [22]. Instead, oxidized proteins are... 

The macromolecular structure of drugs and the fact that relatively minor structural alterations can potentially have a major influence upon bioactivity are often complicating factors. For example, an immunoassay may be blind to the oxidation of an amino acid residue, or very limited proteolytic processing, although such events can activate or decrease bioactivity. 

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