Amide, coupling

The intermolecular coupling of lactams and acyclic amides has also been reported. Reactions of carbamates with aryl halides occurred in the presence of catalysts ligated by P(/-Bu)3.78 Both carbamates and amides coupled with aryl halides in the presence of a catalyst bearing Xantphos.90 In addition, the coupling of lactams with aryl halides has been successful. A combination of Pd(OAc)2 and DPPF first formed A-aryl lactams in good yields from 7-lactams, but the arylation of amides was improved significantly by the use of Xantphos (Equations (20) and (21)).90 91 The reaction of aryl halides with vinyligous amides has also been reported 92... 

Several new methods for the synthesis of the oxazole nucleus were published. A new consecutive three-component oxazole synthesis by an amidation-coupling-cycloisomerisation sequence was developed. The synthesis started from propargylamine 92 and acyl chlorides. To extend this process, a four component sequence involving a carbonylative arylation by substitution of one acyl chloride with an aryl iodide and a CO atmosphere was also performed <06CC4817>. 

SCHEME 53. Antigenic PAMAM-based TF-antigens linked by amide coupling.402... 

Very recently, Shinde and colleagues have prepared the interesting amide coupling reagent diethyl 2-phenylbenzimidazol-l-yl phosphonate 110 and demonstrated that it is an efficient reagent for the preparation of 0-alkyl hydroxamic acids too (Scheme 57) ". The 0-alkyl hydroxamic acids of V-protected amino acids were also synthesized. 

Deoxo-Fluor reagent is a versatile reagent for acyl fluoride generation and subsequent one-flask amide coupling. Georg and coworkers have explored the utility of this reagent for the one-flask conversion of acids to hydroxamic acids and Weinreb amides (Scheme 105) ". ... 

In a different approach, fluorescence-based DNA microarrays are utilized (88). In a model study, chiral amino acids were used. Mixtures of a racemic amino acid are first subjected to acylation at the amino function with formation of A-Boc protected derivatives. The samples are then covalently attached to amine-functionalized glass slides in a spatially arrayed manner (Fig. 10). In a second step, the uncoupled surface amino functions are acylated exhaustively. The third step involves complete deprotection to afford the free amino function of the amino acid. Finally, in a fourth step, two pseudo-Qn nX. om.Qx c fluorescent probes are attached to the free amino groups on the surface of the array. An appreciable degree of kinetic resolution in the process of amide coupling is a requirement for the success of the ee assay (Horeau s principle). In the present case, the ee values are accessible by measuring the ratio of the relevant fluorescent intensities. About 8000 ee determinations are possible per day, precision amounting to +10% of the actual value ((S(S). Although it was not explicitly demonstrated that this ee assay can be used to evaluate enzymes (e.g., proteases), this should in fact be possible. So far this approach has not been extended to other types of substrates. 

Reaction of 217 with Cjq leads to the amino-protected porphyrin-fulleropyrroli-dine, which can easily be deprotected to the corresponding amine [229, 277]. By further functionalization via amide coupling an easy access to extended donor-acceptor systems is possible. A carotene-porphyrin-fullerene triad was prepared by reaction of the amine with the appropriate carotene acid chloride. The motivation for the synthesis of all these donor-acceptor systems is the attempt to understand and imitate the photosynthetic process. On that score, a model for an artificial photosynthetic antenna-reaction center complex has been achieved by attaching five porphyrin cores in a dendrimer-like fashion to the fullerene [242]. 

The chlorinated intermediate 255 is eliminated and cycloadds to Cjq, yielding pyrazo-linofullerenes of the structure 257 (Scheme 4.42). The 4-nitrophenyl-group can be replaced by a 4-methoxyphenyl- or a phenyl substituent. In this reaction various aromatics and substituted aromatics are tolerated as residues R (e.g. furan, ferrocene, pyrazole or benzene and substituted benzene). The nitro group of the nitrophenyl residue can be reduced with Sn-HCl to the aniline derivative, which can be further functionalized by amide coupling with acid chlorides [311]. 

Keto amides couple with samarium(ll) iodide to give //-isomers of pinacol dimers exclusively (Equation (36)). 

Proteases have been much less studied than lipases in ionic liquid media and generally require the presence of water for activity. We note that the thermolysin-catalyzed amide coupling of benzoxycarbonyl-L-aspartate and L-phenylalanine methyl ester into Z-aspartame in [BMIm][PF6] was an early example of an enzymatic reaction in an ionic liquid medium [8]. 

The carbodiimide method has been employed in several syntheses of depsipeptides. However, direct application of DCC for the formation of the ester bond between the amino acid and hydroxy acid components under the usual conditions of amide coupling affords the desired depsipeptides in acceptable yields only in the case of unhindered co-hydroxy units [54] or an active hydroxy group, such as in TV-benzoyl-u-hydroxyglycine benzyl ester. For example, Ravdel et al.[55 have performed the esterification of various benzyloxycarbonyl- and phthalylamino acids with /V-benzoyl-a-hydroxyglycine benzyl ester with DCC in 50-65% yield. On the other hand, Shemyakin et all21 failed to obtain the expected depsipeptide products on condensation of bulky benzyloxycarbonyl- or phthalylvaline with a-hydroxy-isovaleric acid benzyl ester. The main product was acylurea in the first case and phthalylvaline anhydride in the second. Thus, the classical carbodiimide procedure could not be applied in practical depsipeptide preparation. 

The most frequently used carboxyl derivatives in amide coupling are azides, RCO—N3, mixed anhydrides, RCO—O—COR, and esters of moderately acidic phenols, RCO—OAr (see Table 24-1). It also is possible to couple free acid with an amine group using a diimide, R—N=C=N—R, most frequently N,N -dicyclohexylcarbodiimide. 

Enzyme kinetics were evaluated in a PDMS-glass chip using a continuous-flow system. A biotinylated enzyme (HRP or (5-galactosidase) was coupled to streptavidin-coated beads via the amide coupling of an aminocaproyl spacer. These beads (15.5 pm) were retained by a weir in the chip. The channel wall was passivated by 1 mg/mL BSA. The apparent enzyme kinetic parameters were evaluated using the Lilly-Homby model, as developed for the packed-bed enzymatic reactor systems. It was found that the apparent Michaelis constant (Km) approached the tme Km value of the free enzyme at zero-flow rate of a homogeneous reaction [845]. 

An efficient combinatorial solid-phase synthesis of asymmetric cyanine dyes was developed by Isacsson and Westman [17] using a Rink amide polystyrene resin. The picolinium and lepidinium salts 6 were linked to the solid-phase resin by amide coupling, then the benzothiazole derivatives 7 were subsequently condensed with the coupled picoline and lepidine moieties to give the yellow to blue (Amax ahs = 420-590 nm) asymmetric, fluorescent (Amax em = 480-650 nm) cyanine dyes 8 (Scheme 5.2, Fig. 5.3). As a consequence of restricted rotation upon intercalation, the fluorescence quantum yields increase significantly when these dyes are bound to DNA. 

Monotrifluoroacetylated diaminopyrazole was first reacted with the free Kemp s triacid to produce the imide, followed by N-Boc protection and amide-coupling with a m-substituted aniline derivative. Final Boc-deprotection occurred on the chromatography column leading directly to the new receptor modules. The recognition site X was chosen to be ethyl as a neutral reference, acetyl for polar side-chains, nitro for electron-rich aromatic residues and carboxylate for basic amino acids (Figure 2.4.4). 

The synthesis of linker-head intermediate 16, illustrated in Scheme 3.2.5, began with Boc-tranexamic acid 15 [29] which, on amide coupling with Cbz-piperazine and EDC, again followed by palladium-catalyzed hydrogenation of the Cbz group as in the latter case, furnished derivative 16. 

Scheme 3.2.7 shows the formation of dicarboxy template 2, starting by double alkylation of 1 with methyl bromoacetate and sodium hydride, followed by saponification. Target compound 18 was achieved by amide coupling of 2 with intermediate 16 in the presence of EDC and again cleavage of the Boc groups. 

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