Alkaline phosphatase, catalysis

Mammalian alkaline phosphatase catalysis requires active site structure stabilization via the N-terminal amino acid microenvironment. Biochemistry 45 9756-9766... 

Stinson RA (1993) Kinetic parameters for the cleaved substrate, and enzyme and substrate stability, vary with the phosphoacceptor in alkaline phosphatase catalysis. Clin Chem 39 2293-2297... 

Affinity reagent phases, examples, 318-319 Alamethicin, response of photocurrent amplitude to step in bias potential, 60,6, 63 Alkaline phosphatase, catalysis of reaction, 305... 

Phosphates of pharmaceutical interest are often monoesters (Sect. 9.3), and the enzymes that are able to hydrolyze them include alkaline and acid phosphatases. Alkaline phosphatase (alkaline phosphomonoesterase, EC 3.1.3.1) is a nonspecific esterase of phosphoric monoesters with an optimal pH for catalysis of ca. 8 [140], In the presence of a phosphate acceptor such as 2-aminoethanol, the enzyme also catalyzes a transphosphorylation reaction involving transfer of the phosphoryl group to the alcohol. Alkaline phosphatase is bound extracellularly to membranes and is widely distributed, in particular in the pancreas, liver, bile, placenta, and osteoplasts. Its specific functions in mammals remain poorly understood, but it seems to play an important role in modulation by osteoplasts of bone mineralization. 

Currently, only a handful of examples of unique protein carboxylate-zinc interactions are available in the Brookhaven Protein Data Bank. Each of these entries, however, displays syn coordination stereochemistry, and two are bidentate (Christianson and Alexander, 1989) (Fig. 5). Other protein structures have been reported with iyw-oriented car-boxylate-zinc interactions, but full coordinate sets are not yet available [e.g., DNA polymerase (Ollis etal., 1985) and alkaline phosphatase (Kim and Wyckoff, 1989)]. A survey of all protein-metal ion interactions reveals that jyw-carboxylate—metal ion stereochemistry is preferred (Chakrabarti, 1990a). It is been suggested that potent zinc enzyme inhibition arises from syn-oriented interactions between inhibitor carboxylates and active-site zinc ions (Christianson and Lipscomb, 1988a see also Monzingo and Matthews, 1984), and the structures of such interactions may sample the reaction coordinate for enzymatic catalysis in certain systems (Christianson and Lipscomb, 1987). 

The preceding discussion has emphasized catalysis nevertheless, metal ions may also significantly inhibit the rate of hydrolysis of phosphate esters through chelation at phosphorus. A pertinent example is the sixty-fold decrease in the rate of hydrolysis of 2-aminoethylphosphorothioate in the presence of excess Fe(III)148 149. Such a phenomenon underscores the exacting requirements for observation of metal-ion catalysis and implies that charge neutralization per se is not responsible. One should also note the ineffectiveness of Mg(II) or Zn(II) as catalysts in the above systems, the latter required for the activity of alkaline phosphatase ( . co/i.)150. An attractive, but as yet experimentally untested hypothesis, is that such metal ions may catalyze pseudorotation processes which otherwise would violate the preference rules. 

In enzymes, the most common nucleophilic groups that are functional in catalysis are the serine hydroxyl—which occurs in the serine proteases, cholinesterases, esterases, lipases, and alkaline phosphatases—and the cysteine thiol—which occurs in the thiol proteases (papain, ficin, and bromelain), in glyceraldehyde 3-phosphate dehydrogenase, etc. The imidazole of histidine usually functions as an acid-base catalyst and enhances the nucleophilicity of hydroxyl and thiol groups, but it sometimes acts as a nucleophile with the phos-phoryl group in phosphate transfer (Table 2.5). 

Catalyst 17 is effective only with substrates that can bind to the metal ion, so we attached it - coordinated as its Ni2+ derivative - to the secondary face of a-cyclodextrin in catalyst 21 [102]. This was then able to use the metallo-oxime catalysis of our previous study, but with substrates that are not metal ligands, simply those that bind hy-drophobically into the cyclodextrin cavity. As hoped, we saw a significant rate increase in the hydrolysis of p-nitrophenyl acetate, well beyond that for hydrolysis without the catalyst or for simple acetyl transfer to the cyclodextrin itself. Since there was full catalytic turnover, we called compound 21 an artificial enzyme - apparently the first use of this term in the literature. The mechanism is related to that proposed earlier for the enzyme alkaline phosphatase [103]. 

Artificial enzymes with metal ions can also hydrolyze phosphate esters (alkaline phosphatase is such a natural zinc enzyme). We examined the hydrolysis of p-nitro-phenyfdiphenylphosphate (29) by zinc complex 30, and also saw that in a micelle the related complex 31 was an even more effective catalyst [118]. Again the most likely mechanism is the bifunctional Zn-OH acting as both a Lewis acid and a hydroxide nucleophile, as in many zinc enzymes. By attaching the zinc complex 30 to one or two cyclodextrins, we saw even better catalysis with these full enzyme mimics [119]. A catalyst based on 25 - in which a bound La3+ cooperates with H202, not water - accelerates the cleavage of bis-p-nitrophenyl phosphate by over 108-fold relative to uncatalyzed hydrolysis [120]. This is an enormous acceleration. 

Catrina I, O Brien PJ, Purcell J et al (2007) Probing the origin of the compromised catalysis of E. coli alkaline phosphatase in its promiscuous sulfatase reaction. J Am Chem Soc 129 5760-5765... 

So far, only very little attention has been focussed on the use of zeolites in biocatalysis, i.e., as supports for the immobilization of enzymes. Lie and Molin [116] studied the influence of hydrophobicity (dealuminated mordenite) and hydrophilicity (zeolite NaY) of the support on the adsorption of lipase from Candida cylindracea. The adsorption was achieved by precipitation of the enzyme with acetone. Hydrolysis of triacylglycerols and esterification of fatty acids with glycerol were the reactions studied. It was observed that the nature of the zeolite support has a significant influence on enzyme catalysis. Hydrolysis was blocked on the hydrophobic mordenite, but the esterification reaction was mediated. This reaction was, on the other hand, almost completely suppressed on the hydrophilic faujasite. The adsorption of enzymes on supports was also intensively examined with alkaline phosphatase on bentolite-L clay. The pH of the solution turned out to be very important both for the immobilization and for the activity of the enzyme [117]. Acid phosphatase from potato was immobilized onto zeolite NaX [118]. Also in this study, adsorption conditions were important in causing even multilayer formation of the enzyme on the zeolite. The influence of the cations in the zeolite support was scrutinized as well, and zeolite NaX turned out to be a better adsorbent than LiX orKX. 

The AP from E. coli contains two Zn2+ ions and one Mg2+ ion in the active site.68,91 The Zn ions play the most direct roles in catalysis the Mg2+ has been suggested to function as the provider of the general base that deprotonates the Ser nucleophile, in the form of a Mg-coordinated hydroxide.98 All known alkaline phosphatases have this conserved three metal ion center, as well as an arginine residue (Arg-166 in E. coli AP) that plays a role in binding and probably in transition state stabilization (Fig. 18). 

ADP and [y- P]ATP at pH 7, the unlabelied phosphate exchanges with the label under enzymic catalysis. Otherwise, the termini generated on cleavage may first be dephosphorylated with alkaline phosphatase, before end-labelling. At pH 8.6 the exchange reaction is suppressed, and only the kinase reaction for determination of 5 -hydroxy termini takes place. ... 

Although a considerable literature records numerous studies in this field (A19, B17, C12, J3, L9, P16, S4, S5), many have been performed on preparations of tissues from other than human sources. In conformity with the subject of this chapter and to avoid species differences, most attention will be directed to human tissue alkaline phosphatases and in particular their variants. The stereospecific L-phenylalanine inhibition has provided the impetus to study its molecular mechanism, which necessarily requires an understanding of the mechanism of catalysis. It is expected that discovery of other stereospecific inhibitors will follow and that they may have even greater utility than L-phenylalanine. However, since it is the first such unique inhibitor, this section of the chapter will receive extensive treatment after a consideration of some basic kinetic information. 

The problem of elucidating the mechanism of catalysis by alkaline phosphatase has been attacked by a number of workers from different directions from kinetic studies and modification of key linkages in the substrates and enzyme to the visualization of mechanism through models. Studies of related phosphohydrolases are relevant (A19, K26, L20, Pll, P12). 

Many chemical reactions carried out in supercritical fluid media were discussed in the first edition, and those developments are included in total here after some recent work is described. In the epilogue (chapter 13) of the first edition we made reference to one of the author s work in enzyme catalyzed reactions in supercritical fluids that was (then) soon to appear in the literature. The paper (Hammond et al., 1985) was published while the first edition was in print, and as it turned out, there was a flurry of other activity in SCF-enzyme catalysis many articles describing work with a variety of enzymes, e.g., alkaline phosphatase, polyphenol oxidase, cholesterolase, lipase, etc., were published starting in mid 1985. Practical motivations were a potentially easier workup and purification of a product if the solvent is a gas (i.e., no liquid solvent residues to contend with), faster reaction rates of compounds because of gas-like transport properties, environmental advantages of carbon dioxide, and the like. 

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