X-ray crystallization

Diederich F, Jonas U, Gramlich V, Herrmann A, Ringsdorf H and Thilgen C 1993 Synthesis of a fullerene derivative of benzo[18]crown-6 by Diels-Alder reaction complexation ability, amphiphilic properties, and x-ray crystal structure of a dimethoxy-1,9-(methano[1, 2]benzomethano)fullerene[60] benzene clathrate Helv. Chim. Acta 76 2445-53... 

Bode, W., Papamokos, E., Musil, D. The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Eur. J. Biochem. 166 (1987) 673-692... 

The Empirical Conformational Energy Program for Peptides, ECEPP [63, 64], is one of the first empirical interatomic potentials whose derivation is based both on gas-phase and X-ray crystal data [65], It was developed in 1975 and updated in 1983 and 1992. The actual distribution (dated May, 2000) can be downloaded without charge for academic use. 

Frazao C, C Topham, V Dhanaraj and T L Blundell 1994. Comparative Modelling of Human Rer Retrospective Evaluation of the Model with Respect to the X-ray Crystal Structure, Pure and A Chemistry 66 43-50. 

D, H W Hoeffken, D Crosse, J Stuerzebecher, P D Martin, B F P Edwards and W Bode 1992. Refined 2.3 Angstroms X-Ray Crystal Structure of Bovine Thrombin Complexes Formed witli he 3 Benzamidine and Arginine-Based Thrombin Inhibitors NAPAP, 4-TAPAP and MQPA A Starting Point for Improving Antithrombotics. Journal of Molecular Biology 226 1085-1099. 

D, J Sturzebecher and WBode 1991. Geometry of Binding of the N-Alpha-Tosylated Piperidides of weffl-Amidino-Phenylalanine, Para Amidino-Phenylalanine and para-Guanidino-Phenylalanine to Thrombin and Trypsin - X-ray Crystal Structures of Their Trypsin Complexes and Modeling of their Thrombin Complexes. FEBS Letters 287 133-138. 

An impressive example of the application of structure-based methods was the design of a inhibitor of the HIV protease by a group of scientists at DuPont Merck [Lam et al. 1994 This enzyme is crucial to the replication of the HIV virus, and inhibitors have bee shown to have therapeutic value as components of anti-AIDS treatment regimes. The star1 ing point for their work was a series of X-ray crystal structures of the enzyme with number of inhibitors boimd. Their objective was to discover potent, novel leads whid were orally available. Many of the previously reported inhibitors of this enzyme possessei substantial peptide character, and so were biologically unstable, poorly absorbed am rapidly metabolised. 

This is a simplified formula for tartar emetic, for X-ray crystal analysis and infrared studies indicate that the. Sb is a part of the antimonate anion [Sb(OH)4] and forms part of a cyclic system. 

Haworth formulas are satisfactory for representing configurational relationships in pyranose forms but are uninformative as to carbohydrate conformations X ray crystal lographic studies of a large number of carbohydrates reveal that the six membered pyra nose ring of D glucose adopts a chair conformation... 

X-Ray Crystallography. Structural data exists on more than one thousand steroids. Comparisons of the conformations obtained by x-ray crystallography have been made to the conformations obtained by other methods (161). Several studies use x-ray crystal stmctures in the study of progestins. 

A definitive method for stmctural deterrnination is x-ray crystallography. Extensive x-ray crystal stmcture deterrninations have been done on a wide variety of steroids and these have been collected and Hsted (270). In addition, other analytical methods for steroid quantification or stmcture determination include, mass spectrometry (271), polarography, fluorimetry, radioimmunoassay (264), and various chromatographic techniques (272). 

Conformational analysis has been used to find and predict conformations which maximize antibiotic activity, using x-ray crystal stmctures coupled with nmr and cd spectra. An early approach utilized the Dale diamond lattice conformational model (480), which was extended to other diamond lattice models (472,481—483). Other studies have reHed on nmr data (225,484—491). However, extensive correlations between conformation and biological activity have not been successful (486,492). 

Phenylstibine [58266-50-5] C H Sb, has been obtained by the reduction of phenyldiio do stihine [68972-61-2] CgH3l2Sb, (73) or phenyldichlorostibine [5035-52-9] 031130.2, (74) with lithium borohydride. It has also been prepared by the hydrolysis or methanolysis of phenylbis(trimethylsilyl)stibine [82363-95-9] C22H23Si2Sb (75). Diphenylstibine [5865-81-6] C22H22Sb, can be prepared by the interaction of diphenylchlorostibine [2629-47-2] C22H2QClSb, with either Hthium borohydride (76) or lithium aluminum hydride (77). It is also formed by hydrolysis or methanolysis of diphenyl (trimethylsilyl)stibine [69561-88-2] C H SbSi (75). Dimesitylstibine [121810-02-4] h.3.s been obtained by the protonation of lithium dimesityl stibide with trimethyl ammonium chloride (78). The x-ray crystal stmcture of this secondary stibine has also been reported. 

Sodium Perborate Hydrates. Peroxyborates are commonly known as perborates, written as if the perborate anion were BO . X-ray crystal stmcture has shown that they contain the dimeric anion [(H0)2B(02)2B(0H)2] (7) (92). Three sodium perborate hydrates, NaBO XH2O (x = 1, 3, and 4), are known. Only the mono- and tetrahydrate are of commercial importance, primarily as bleaching agents (qv) in laundry products. 

Diammonium Tetraborate Tetrahydrate. Diammonium tetraborate tetrahydrate, (NH 2 4Dy 4H2O or (NH 2D 2B202 H2O formula wt, 263.37 monoclinic sp gr, 1.58 is readily soluble ia water (Table 9). The pH of solutions of diammonium tetraborate tetrahydrate is 8.8 and iadependent of concentration. The compound is quite unstable and exhibits an appreciable vapor pressure of ammonia. Phase relationships have been outlined and the x-ray crystal stmcture formula is (NH 2P4D5(OH)J 2H20 (124). 

The deterrnination of the stmcture of Fe (00) 2 proved to be a difficult problem. An early report on the crystal stmcture claimed the molecule was a monoclinic prism and estabHshed the molecular formula (22). In a later report stmcture (8) was shown to be a triangular array of iron atoms with two bridging and 10 terminal CO molecules. This accepted stmcture was initially deduced from an x-ray crystal stmcture of the Fe2(CO)22H analogue (23). 

Crystal stmcture analyses of cyanine and related dyes are reviewed in Ref. 32. Most typical sensitizers are nearly planar, with angles of less than 15° between planes defined by heterocycHc rings. Distinct solvent of crystallization is present in most of the cationic dyes. X-ray crystal analyses also provide intermolecular data. Because of photographic use of cyanine and carbocyanine dyes, the cation-cation arrangements of most interest have been those for l,l -dieth5l-2,2 -quinocyanine chloride [2402-42-8] 5,5, 6,6 -tetrachloro-l,l, 3,3 -tetraethylbenzimidazolocarbocyanineiodide [3520-43-2] and 5,5 -dichloro-3,3, 9-triethylthiacarbocyanine bromide [18426-56-7] (32) (see Fig. 8). 

X-ray crystal stmctures (32,46) and molecular mechanics calculations (47,48) now provide specific data about intermolecular spacings between associated dye molecules. 

X-ray crystal structure, 6, 516 Benzophenanthridines synthesis from anils, 2, 416 Benzophenanthridines, tetrahydro-synthesis, 2, 469 Benzo[c]phenanthridines synthesis, 2, 414 from aryl isocyanides, 2, 411 from benzynes, 2, 432 Benzo[i]phenanthridines synthesis, 2, 414 Benzophenanthridinones... 

Oxetane, 3,3-bis(trimethylaminomethyl)-methane sulfonate X-ray crystal structure, 7, 365 Oxetane, 3-bromo-synthesis, 7, 390 Oxetane, 2-t-butyl-3-methyl-synthesis, 7, 399 Oxetane, 2-chloro-reactions, 7, 390 Oxetane, 3-chloro-synthesis, 7, 390... 

Oxetane, 2-(o -chlorobenzyl)-2-phenyl-X-ray crystal structure, 7, 366 Oxetane, 3-chloromethyl-3-ethyl-ring strain, 7, 370-371 Oxetane, 2-(o-chlorophenyl)- H NMR, 7, 367 Oxetane, 2-cyano-synthesis, 7, 391-392 Oxetane, 2-cyano-3,3-dimethyl-2-phenyl-thermolysis, 7, 372 Oxetane, 2,2-dialkoxy-synthesis, 7, 396 Oxetane, 2,2-dialkyl-isomerization, 7, 377 Oxetane, 3,3-dialkyl-alkylative cleavage, 7, 381 polymers, 7, 382 Oxetane, 2-diethylamino-synthesis, 7, 390 Oxetane, 3,3-difluoro-molecular dimensions, 7, 365 Oxetane, 2,2-dimethyl-mass spectra, 7, 368-369 photolysis, 7, 373 synthesis, 7, 393 Oxetane, 2,3-dimethyl- H NMR, 7, 366 thermolysis, 7, 372 Oxetane, 2,4-dimethyl-mass spectrum, 7, 369... 

Oxetane-2-methanol, t/ireo-a,3,3,4,4-pentamethyl-3,5-dinitrobenzoate X-ray crystal structure, 7, 365 Oxetane-3-methanol, 3-alkyl-reactions... 

H,6H-Pyridazino[4,5-d]pyridazine-l,5-dione, 4,8-dichloro-2,6-dimethyl-X-ray crystal structure, 3, 333 Pyridazino[l, 2-a]pyridazine-1,4-diones IR spectra, 3, 332... 

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