Synthesis target molecule

The cinchona alkaloids have opened up the field of asymmetric oxidations of alkenes without the need for a functional group within the substrate to form a complex with the metal. Current methodology is limited to osmium-based oxidations. The power of the asymmetric dihydroxylation reaction is exemplified by the thousands (literally) of examples for the use of this reaction to establish stereogenic centers in target molecule synthesis. The usefulness of the AD reaction is augmented by the bountiful chemistry of cyclic sulfates and sulfites derived from the resultant 1,2-diols. 

T distortions, external fields 489 Tait equation, phase transitions 370 target molecules, synthesis 91 target structures, building blocks 98 TBBA, difiusion 590 TBDA, volume/density changes 336 temperature control, X ray experiments 633 temperature dependence... 

Phase-Tranter Catalysis in Target Molecule Synthesis 1371... 

Reagent A compound which reacts to give an intermediate in the planned synthesis or to give the target molecule itself. The synthetic equivalent of a synthon. 

Target Molecule The molecule whose synthesis is being planned. Usually written TM and identified by fhe frame number. 

This then is the disconnection corresponding to the reaction. It is the thinking device we use to help us work out a synthesis of t-butyl alcohol. We could of course have broken any other bond in the target molecule such as ... 

As an example, let s analyse the synthesis of y-lactones (e.g. TM 334) and see how we may choose one of a number of strategies depending on the structure of the target molecule. We ll consider in turn each of the three C-C bond disconnections. The one with the most appeal is probably b complete the analysis for this approach. 

Though you can in principle add a carbonyl group anywhere in a target molecule, remember it means extra steps in the synthesis so use it only as a last resort. 

The program is used by first building the target molecule. It then generates a list of possible precursors. The user can choose which precursor to use and then obtain a list of precursors to it. The reaction name and conditions can also be displayed. Once a satisfactory synthesis route is found, it can be printed without all the other possible precursors included. The drawing mode worked well and the documentation was well written. 

The usefulness of the Knorr synthesis arises from the fact that 1,3-dioxo compounds and a-aminoketones are much more easily accessible in large quantities than rational 1,4-difunctional precursors. Such practical syntheses are known for several important hetero-cycles. They are usually limited to certain substitution patterns of the target molecules. 

The systematic application of both antithetic steps will now be exemplified with the admittedly trivial synthesis of 3-methylbutanal (isovaleraldehyde). Functional group operations would yield the following alternative target molecules ... 

Since (A) does not contain any other functional group in addition to the formyl group, one may predict that suitable reaction conditions could be found for all conversions into (A). Many other alternative target molecules can, of course, be formulated. The reduction of (H), for example, may require introduction of a protecting group, e.g. acetal formation. The industrial synthesis of (A) is based upon the oxidation of (E) since 3-methylbutanol (isoamyl alcohol) is a cheap distillation product from alcoholic fermentation ( fusel oils ). The second step of our simple antithetic analysis — systematic disconnection — will now be exemplified with all target molecules of the scheme above. For the sake of brevity we shall omit the syn-thons and indicate only the reagents and reaction conditions. 

It is clearly evident from Che extremely simple example of the synthesis of Isovaleralde-hyde that a fully systematic approach to antithesis is not very useful. Chemists are not interested in encyclopedic catalogues of synthetic routes. We shall now discuss a few simple examples, where availability and price of starting materials are considered. This restriction generally reduces long lists of alternative target molecules and precursors to a few proposals. 

The target molecule above contains a chiral center. An enantioselective synthesis can therefore be developed We use this opportunity to summarize our knowledge of enantioselective reactions. They are either alkylations of carbanions or addition reactions to C = C or C = 0 double bonds ... 

Out first example is 2-hydroxy-2-methyl-3-octanone. 3-Octanone can be purchased, but it would be difficult to differentiate the two activated methylene groups in alkylation and oxidation reactions. Usual syntheses of acyloins are based upon addition of terminal alkynes to ketones (disconnection 1 see p. 52). For syntheses of unsymmetrical 1,2-difunctional compounds it is often advisable to look also for reactive starting materials, which do already contain the right substitution pattern. In the present case it turns out that 3-hydroxy-3-methyl-2-butanone is an inexpensive commercial product. This molecule dictates disconnection 3. Another practical synthesis starts with acetone cyanohydrin and pentylmagnesium bromide (disconnection 2). Many 1,2-difunctional compounds are accessible via oxidation of C—C multiple bonds. In this case the target molecule may be obtained by simple permanganate oxidation of 2-methyl-2-octene, which may be synthesized by Wittig reaction (disconnection 1). 

The two-bond disconnection (re/ro-cycloaddition) approach also often works very well if the target molecule contains three-, four-, or five-membered rings (see section 1.13 and 2.5). The following tricyclic aziridine can be transformed by one step into a monocyclic amine (W. Nagata, 1968). In synthesis one would have to convert the amine into a nitrene, which-would add spontcaneously to a C—C double bond in the vicinity. 

In the last fifteen years macrolides have been the major target molecules for complex stereoselective total syntheses. This choice has been made independently by R.B. Woodward and E.J. Corey in Harvard, and has been followed by many famous fellow Americans, e.g., G. Stork, K.C. Nicolaou, S. Masamune, C.H. Heathcock, and S.L. Schreiber, to name only a few. There is also no other class of compounds which is so suitable for retrosynthetic analysis and for the application of modem synthetic reactions, such as Sharpless epoxidation, Noyori hydrogenation, and stereoselective alkylation and aldol reactions. We have chosen a classical synthesis by E.J. Corey and two recent syntheses by A.R. Chamberlin and S.L. Schreiber as examples. 

An important concern to chemists is synthesis the challenge of preparing a particular compound m an economical way with confidence that the method chosen will lead to the desired structure In this section we will introduce the topic of synthesis emphasiz mg the need for systematic planning to decide what is the best sequence of steps to con vert a specified sfarfmg mafenal fo a desired producf (fhe target molecule)... 

The reactions described so far can be carried out sequentially to prepare compounds of prescribed structure from some given starting material The best way to approach a synthesis is to reason backward from the desired target molecule and to always use reactions that you are sure will work The 11 exercises that make up Problem 6 32 at the end of this chapter provide some opportunities for practice... 

Covalent synthesis of complex molecules involves the reactive assembly of many atoms into subunits with aid of reagents and estabUshed as well as innovative reaction pathways. These subunits are then subjected to various reactions that will assemble the target molecule. These reaction schemes involve the protection of certain sensitive parts of the molecule while other parts are being reacted. Very complex molecules can be synthesized in this manner. A prime example of the success of this approach is the total synthesis of palytoxin, a poisonous substance found in marine soft corals (35). Other complex molecules synthesized by sequential addition of atoms and blocks of atoms include vitamin potentially anticancer KH-1 adenocarcinoma antigen,... 

Structural symmetry, either in a target molecule or in a subunit derived from it by antithetic dissection, can usually be exploited to reduce the length or complexity of a synthesis. 

It is not surprising that multistep synthesis of challenging and complex target molecules is an engine for the discovery of new synthetic principles and novel methodology which may have very broad application. Just as each component of structural complexity can signal a strategy for synthesis, each obstacle to the realization of a chemical synthesis presents an opportunity for scientific discovery. 

Antithetic Analysis. (Synonymous with Retrosynthetic Analysis) A problem-solving technique for transforming the structure of a synthetic target molecule to a sequence of progressively simpler structures along a pathway which ultimately leads to simple or commercially available starting materials for a chemical synthesis. 

Ex-Target Tree. (EXTGT Tree) A branching tree structure formed by retrosynthetic analysis of a target molecule (treetop). Such trees grow out from a target and consist of nodes which correspond to the structures of intermediates along a pathway of synthesis. 

Target Molecule. (TGT) A molecule whose synthesis is under examination by retrosynthetic analysis. 

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