Substrate oxidation

Thin oxide films may be prepared by substrate oxidation or by vapour deposition onto a suitable substrate. An example of the fomrer method is the preparation of silicon oxide thin-films by oxidation of a silicon wafer. In general, however, the thickness and stoichiometry of a film prepared by this method are difficult to control. 

In the oxidation process, a layer of dopant is apphed to the surface of sihcon and patterned sihcon dioxide for subsequent thermal diffusion into the sihcon. The masking property of the Si02 is based on differences in rates of diffusion. Diffusion of dopant into the oxide is much slower than the diffusion into the sihcon. Thus, the dopants reach only the sihcon substrate. Oxide masks are usually 0.5—0.7 p.m thick. 

Liquid Crystals. In liquid crystal displays, clarity and permanence of image is enhanced if the display can be oriented parallel or perpendicular to the substrate. Oxide surfaces treated with dimethyloctadecy1-3-trimethoxysi1y1propy1 ammonium chloride [27668-52-6] ... 

ATP Adenosine triphosphate. Chemical energy generated by substrate oxidations is conserved by formation of high-energy compounds such as adenosine diphosphate (ADP) and adenosine triphosphate (ATP) or compounds containing the thioester bond. 

A complete cycle of iron-oxo generation and substrate oxidation with the consumption of one equivalent 02 and one equivalent a-ketoglutarate is necessary for each of the reactions catalyzed by clavaminate synthase. The different substrates utilized by clavaminate synthase adopt slightly different positions relative to the... 

Cell growth and metabolic activities are similarly described as a simple chemical reaction. It is also necessary to establish a definite formula for dry cell matter. The elemental composition of certain strains of microorganism is defined by an empirical formula CHaO/3Ns. The general biochemical reaction for biomass production is based on consumption of organic substrate, as shown below. Substrate oxidation is simplified in the following biochemical oxidation ... 

Many inhibitors of substrate oxidations, substrate transport, electron transport, and ATP synthesis are known including many well-known toxins (see Sherratt, 1981 Harold, 1986 Nicholls and Ferguson, 1992). These are not discussed here except to mention specific uncouplers of oxidative phosphorylation. Classic uncouplers such as 2,4-dinitrophenol have protonated and unprotonated forms, both of which are lipid soluble and cross the inner mitochondrial membrane discharging the proton gradient. This prevents ATP synthesis and stimulates respiration. 

Although only two protons are pumped out of the matrix, two others from the matrix are consumed in the formation of H2O. There is therefore a net translocation of four positive charges out of the matrix which is equivalent to the extrusion of four protons. If four protons are required by the chemiosmotic mechanism to convert cytosolic ADP + Pj to ATP, then 0.5 mol ATP is made for the oxidation of one mol of ubiquinol and one mol ATP for the oxidation of 2 mols of reduced cytochrome c. These stoichiometries were obtained experimentally when ubiquinol was oxidized when complexes I, II, and IV were inhibited by rotenone, malonate, and cyanide, respectively, and when reduced cytochrome c was oxidized with complex III inhibited by antimycin (Hinkle et al., 1991). (In these experiments, of course, no protons were liberated in the matrix by substrate oxidation.) However, in the scheme illustrated in Figure 6, with the flow of two electrons through the complete electron transport chain from substrate to oxygen, it also appears valid to say that four protons are extmded by complex I, four by complex III, and two by complex 1. 

A Mossbauer study of the protein reacted with benzaldehyde (in parallel with EPR detection of Mo(V) signals) shows partial reduction of the iron—sulfur centers, indicating the involvement of the clusters in the process of substrate oxidation and rapid intramolecular electron transfer from the molybdenum to the iron—sulfur sites. 

As can be seen, many methods are available for the immobilization of salen-metal complexes, although it is difficult to elucidate which one is the best. Even in the case of epoxidation, the differences in substrates, oxidants, and reaction conditions preclude any direct comparison. 

Figure 17.3 Anatomy of a redox enzyme representation of the X-ray crystallographic structure of Trametes versicolor laccase III (PDB file IKYA) [Bertrand et al., 2002]. The protein is represented in green lines and the Cu atoms are shown as gold spheres. Sugar moieties attached to the surface of the protein are shown in red. A molecule of 2,5-xyhdine that co-crystallized with the protein (shown in stick form in elemental colors) is thought to occupy the broad-specificity hydrophobic binding pocket where organic substrates ate oxidized by the enzyme. Electrons from substrate oxidation are passed to the mononuclear blue Cu center and then to the trinuclear Cu active site where O2 is reduced to H2O. (See color insert.)...

Oubrie A, Rozeboom HJ, Kalk KH, Huizinga EG, Dijkstra BW. 2002. Crystal structure of qui-nohemoprotein alcohol dehydrogenase from Comamonas testosteroni Structural basis for substrate oxidation and electron transfer. J Biol Chem 211 3727-3732. 

Decomposition of Peroxides by Various Stabilizers. The efficiency of tert-butyl hydroperoxide decomposition in tert-butyl alcohol by various additives was determined (Table 9). Under the conditions of these experiments, the phenolic antioxidants and dilauryl thiodipropionate had little or, often, no effect on the hydroperoxide decomposition. The three zinc salts effectively inhibited peroxide decomposition. This effect might briefly inhibit the onset of substrate oxidation under weathering-test conditions, but the peroxide would decompose whenever its concentration reached a sufficient level to permit significant light... 

Extensive studies have established that the catalytic cycle for the reduction of hydroperoxides by horseradish peroxidase is the one depicted in Figure 6 (38). The resting enzyme interacts with the peroxide to form an enzyme-substrate complex that decomposes to alcohol and an iron-oxo complex that is two oxidizing equivalents above the resting state of the enzyme. For catalytic turnover to occur the iron-oxo complex must be reduced. The two electrons are furnished by reducing substrates either by electron transfer from substrate to enzyme or by oxygen transfer from enzyme to substrate. Substrate oxidation by the iron-oxo complex supports continuous hydroperoxide reduction. When either reducing substrate or hydroperoxide is exhausted, the catalytic cycle stops. 

Mitochondria do three things oxidize substrates, consume oxygen, and make ATP. Uncouplers prevent the synthesis of ATP but do not inhibit oxygen consumption or substrate oxidation. Uncouplers work by destroying the pH gradient. The classic uncoupler is dinitrophenol (DNP). This phenol is a relatively strong acid and exists as the phenol and the phenolate anion. 

Iodine liberation is one of the oldest and most commonly used methods for assessing lipid substrate oxidation. In this method, hydroperoxides and peroxides oxidize aqueous iodide to iodine, which is then titrated with standard thiosulfate solution and starch as endpoint indicator. The peroxide value is calculated as milliequivalents of peroxide oxygen per kilogram of sample. 

Ligand Influences in Copper-Dioxygen Complex-Formation and Substrate Oxidations... 

Ortiz de Montellano PR, Voss JJ. Substrate oxidation by cytochrome P450. In Ortiz de Montellano PR, ed. Cytochrome P-450, Structure, Mechanism, and Biochemistry (3rd ed). New York, NY Kluwer Academic/Plenum 2005 198-200. 

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