Spectroscopic X-ray diffraction

Carrell TG, Tyryshkin AM, Dismukes GC. An evolution of structural models for the photosynthetic water-oxidising complex derived from spectroscopic X-ray diffraction signatures. J Biol Inorg Chem 2001 7 2-22. 

The Rotational Isomerism of the Disilanes /BuX2SiSiX2tBu (X = Cl, Br and I) A Combined Raman Spectroscopic, X-Ray Diffraction and Ab Initio Study... 

A Combined Raman Spectroscopic, X-Ray Diffraction and Ab Initio Study.180... 

Structure of the MoFe Protein. Extensive spectroscopic studies of the MoEe proteia, the appHcation of cluster extmsion techniques (84,151), x-ray anomalous scattering, and x-ray diffraction (10,135—137,152) have shown that the MoEe proteia contains two types of prosthetic groups, ie, protein-bound metal clusters, each of which contains about 50% of the Ee and content. Sixteen of the 30 Ee atoms and 14—16 of the 32—34... 

EXAFS is a nondestructive, element-specific spectroscopic technique with application to all elements from lithium to uranium. It is employed as a direct probe of the atomic environment of an X-ray absorbing element and provides chemical bonding information. Although EXAFS is primarily used to determine the local structure of bulk solids (e.g., crystalline and amorphous materials), solid surfaces, and interfaces, its use is not limited to the solid state. As a structural tool, EXAFS complements the familiar X-ray diffraction technique, which is applicable only to crystalline solids. EXAFS provides an atomic-scale perspective about the X-ray absorbing element in terms of the numbers, types, and interatomic distances of neighboring atoms. 

Solid state NMR is a relatively recent spectroscopic technique that can be used to uniquely identify and quantitate crystalline phases in bulk materials and at surfaces and interfaces. While NMR resembles X-ray diffraction in this capacity, it has the additional advantage of being element-selective and inherently quantitative. Since the signal observed is a direct reflection of the local environment of the element under smdy, NMR can also provide structural insights on a molecularlevel. Thus, information about coordination numbers, local symmetry, and internuclear bond distances is readily available. This feature is particularly usefrd in the structural analysis of highly disordered, amorphous, and compositionally complex systems, where diffraction techniques and other spectroscopies (IR, Raman, EXAFS) often fail. 

An intensely colored by-product of the photolysis reaction of methyl-2-azidobenzoate has been identified as the first known derivative of 3,3 -diazaheptafulvalene 70 (94LA1165). Its molecular mass was established by elemental analysis and mass spectroscopy as that of a formal nitrene dimer, whereas and NMR studies demonstrated the twofold symmetry as well as the existence of a cross-conjugated 14 7r-electron system in 70. Involving l-azido-2,3-dimethoxy-5,6-dimethoxycarbonylbenzene in thermal decomposition reactions, the azaheptafulvalene 71 could be isolated and characterized spectroscopically and by means of X-ray diffraction. Tliis unusual fulvalene can be regarded as a vinylogous derivative of azafulvalenes (96JHC1333) (Scheme 28). 

The technique as we have described it works only for polar molecules, because only they can interact with microwave radiation. However, variations of these spectroscopic methods can be used to investigate nonpolar molecules, too. A major limitation of the technique is that only the spectra of simple molecules can be interpreted. For complex molecules, we use solid samples and x-ray diffraction techniques. 

Besides synthesis, current basic research on conducting polymers is concentrated on structural analysis. Structural parameters — e.g. regularity and homogeneity of chain structures, but also chain length — play an important role in our understanding of the properties of such materials. Research on electropolymerized polymers has concentrated on polypyrrole and polythiophene in particular and, more recently, on polyaniline as well, while of the chemically produced materials polyacetylene stih attracts greatest interest. Spectroscopic methods have proved particularly suitable for characterizing structural properties These comprise surface techniques such as XPS, AES or ATR, on the one hand, and the usual methods of structural analysis, such as NMR, ESR and X-ray diffraction techniques, on the other hand. 

The acid-base interaction in group 13-stibine and -bismuthine adducts seems to be very weak as is indicated by mass spectroscopic studies, which never showed the molecular ion peak but only the respective Lewis acid and Lewis base fragments. The extreme lability in the gas phase may also account for the fact that there are only very few reports on thermodynamic data of group 13-stibine or bismuthine adducts in the literature. Therefore, multinuclear NMR spectroscopy and single crystal X-ray diffraction are the most important analytical tools for the characterization of such adducts. 

The distances between atoms in a molecule are characteristic properties of the molecule and can give us information if we compare the same bond in different molecules. The chief methods of determining bond distances and angles are X-ray diffraction (only for solids), electron diffraction (only for gases), and spectroscopic methods, especially microwave spectroscopy. The distance between the atoms of a bond is not constant, since the molecule is always vibrating the measurements obtained are therefore average values, so that different methods give different results. However, this must be taken into account only when fine distinctions are made. 

Since the vibrational spectra of sulfur allotropes are characteristic for their molecular and crystalline structure, vibrational spectroscopy has become a valuable tool in structural studies besides X-ray diffraction techniques. In particular, Raman spectroscopy on sulfur samples at high pressures is much easier to perform than IR spectroscopical studies due to technical demands (e.g., throughput of the IR beam, spectral range in the far-infrared). On the other hand, application of laser radiation for exciting the Raman spectrum may cause photo-induced structural changes. High-pressure phase transitions and structures of elemental sulfur at high pressures were already discussed in [1]. 

Spectroscopic techniques as 13C-NMR [28], ESR [29], pyrolysis-GC/MS, and pyrolysis-Fourier transform infrared (FTIR) [30], x-ray diffraction [31], and SEM [32] techniques are also used to study mbber oxidation. 

It is a supposition that the )9-sheet structure of neurotoxin is an essential structural element for binding to the receptor. The presence of -sheet structure was found by Raman spectroscopic analysis of a sea snake neurotoxin (2). The amide I band and III band for Enhydrina schistosa toxin were at 1672 cm and 1242 cm" respectively. These wave numbers are characteristic for anti-parallel -sheet structure. The presence of -sheet structure found by Raman spectroscopic study was later confirmed by X-ray diffraction study on Laticauda semifasciata toxin b. 

The catalyst prepared above was characterized by X-ray diffraction, X-ray photoelectron and Mdssbauer spectroscopic studies. The catalytic activities were evaluated under atmospheric pressure using a conventional gas-flow system with a fixed-bed quartz reactor. The details of the reaction procedure were described elsewhere [13]. The reaction products were analyzed by an on-line gas chromatography. The mass balances for oxygen and carbon beb een the reactants and the products were checked and both were better than 95%. 

There are no known examples of supported clusters dispersed in crystallo-graphically equivalent positions on a crystalline support. Thus, no structures have been determined by X-ray diffraction crystallography, and the best available methods for structure determination are various spectroscopies (with interpretations based on comparisons with spectra of known compoimds) and microscopy. The more nearly uniform the clusters and their bonding to a support, the more nearly definitive are the spectroscopic methods however, the uniformities of these samples are not easy to assess, and the best microscopic methods are limited by the smallness of the clusters and their tendency to be affected by the electron beam in a transmission electron microscope furthermore, most supported metal clusters are highly reactive and... 

In addition, data obtained from infrared, thermal, and fluorescence spectroscopic studies of the outermost layer of skin, stratum corneum (SC), and its components imply enhancer-improved permeation of solutes through the SC is associated with alterations involving the hydrocarbon chains of the SC lipid components. Data obtained from electron microscopy and x-ray diffraction reveals that the disordering of the lamellar packing is also an important mechanism for increased permeation of drugs induced by penetration enhancers (for a recent review, see Ref. 206). 

---