Distance interatomic

EXAFS Extended X-ray absorption fine structure spectroscopy. A spectroscopic technique which can determine interatomic distances very precisely. 

EXAFS Extended x-ray absorption fine structure [177, 178] Variation of x-ray absorption as a function of x-ray energy beyond an absorption edge the probability is affected by backscattering of the emitted electron from adjacent atoms Number and interatomic distance of surface atoms... 

Figure Al.5.3 shows that, as in interactions between other species, the first-order energy for Fte-Fle decays exponentially with interatomic distance. It can be fitted [70] within 0.6% by a fimction of the fonn... 

Patterson A L 1934 A Fourier series method for for the determination of the components of interatomic distances in crystals Phys. Rev. 46 372-6... 

The dynamics of ion surface scattering at energies exceeding several hundred electronvolts can be described by a series of binary collision approximations (BCAs) in which only the interaction of one energetic particle with a solid atom is considered at a time [25]. This model is reasonable because the interaction time for the collision is short compared witii the period of phonon frequencies in solids, and the interaction distance is shorter tlian the interatomic distances in solids. The BCA simplifies the many-body interactions between a projectile and solid atoms to a series of two-body collisions of the projectile and individual solid atoms. This can be described with results from the well known two-body central force problem [26]. 

As the kinetic energy involved in the system goes higher, the interaction of energetic particles is more and more localized near the nuclei. When the interaction distance is much smaller than interatomic distances in the system, the BCA is valid ... 

The major role of TOF-SARS and SARIS is as surface structure analysis teclmiques which are capable of probing the positions of all elements with an accuracy of <0.1 A. They are sensitive to short-range order, i.e. individual interatomic spacings that are <10 A. They provide a direct measure of the interatomic distances in the first and subsurface layers and a measure of surface periodicity in real space. One of its most important applications is the direct determination of hydrogen adsorption sites by recoiling spectrometry [12, 4T ]. Most other surface structure teclmiques do not detect hydrogen, with the possible exception of He atom scattering and vibrational spectroscopy. 

The interatomic distances of the triangle ABC formed due to any A + BC type reactive system are as follows ... 

In applying minimal END to processes such as these, one finds that different initial conditions lead to different product channels. In Figure 1, we show a somewhat truncated time lapse picture of a typical trajectory that leads to abstraction. In this rendering, one of the hydrogens of NHaD" " is hidden. As an example of properties whose evolution can be depicted we display interatomic distances and atomic electronic charges. Obviously, one can similarly study the time dependence of various other properties during the reactive encounter. 

If A transforms to B by an antara-type process (a Mdbius four electron reaction), the phase would be preserved in the reaction and in the complete loop (An i p loop), and no conical intersection is possible for this case. In that case, the only way to equalize the energies of the ground and excited states, is along a trajectory that increases the separation between atoms in the molecule. Indeed, the two are computed to meet only at infinite interatomic distances, that is, upon dissociation [89]. 

In other words, for calculating the second-order energy (the vibrational energy), we only have to keep the term to do with the interatomic distance. The other terms, then, will enter the total Schrddinger equation in higher orders. 

The location of the crossing seam (or seam) for an X3 system is established from the requirement that /-ab = rec = r c, where j-ab, rec, and fAc are the interatomic distances. Since the goal are the the geometric properties produced by this seam, hyperspherical coordinates (p,0,atomic masses are equal, say iiiB = me, the seam is defined [5] by... 

By equating the three interatomic distances with each other, we find that the seam is a sfi aight line, for which p is arbitrary but tp and 0 have fixed values

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As in the case of ions we can assign values to covalent bond lengths and covalent bond radii. Interatomic distances can be measured by, for example. X-ray and electron diffraction methods. By halving the interatomic distances obtained for diatomic elements, covalent bond radii can be obtained. Other covalent bond radii can be determined by measurements of bond lengths in other covalently bonded compounds. By this method, tables of multiple as well as single covalent bond radii can be determined. A number of single covalent bond radii in nm are at the top of the next page. 

Additional features determine properties such as interatomic distances, bond angles, and dihedral angles from atomic coordinates. Animations of computed vibrational modes from quantum chemistry packages arc also included. http //fiourceforge.nei/projecl /j mol/... 

Full structure search can be developed by using similar approaches to those employed in the case of 2D structure search. Thus, some topological indices can be modified in such a way that they include geometrical information. For example, the global index given by Eq. (4) can be modified to Eq. (11), where are real interatomic distances. 

Additionally to and a third adjustable parameter a was introduced. For a-values between 14 and 15, a form very similar to the Lennard-Jones [12-6] potential can be obtained. The Buckingham type of potential has the disadvantage that it becomes attractive for very short interatomic distances. A Morse potential may also be used to model van der Waals interactions in a PEF, assuming that an adapted parameter set is available. 

You can include geometric restraints—for interatomic distances, bond angles, and torsion angles—in any molecular dynamics calculation or geometry optim i/.ation. Here are some applications of restrain ts ... 

Note You can superimpose harmonic restraining forces to interatomic distances, angles, or dihedrals that you have set up as named selections. Yon can also restrain atoms to points in space. See Using Geometric Restraints" on page SI and "Restraints" on page 105. 

One way to describe the conformation of a molecule other than by Cartesian or intern coordinates is in terms of the distances between all pairs of atoms. There are N(N - )/ interatomic distances in a molecule, which are most conveniently represented using a N X N S5munetric matrix. In such a matrix, the elements (i, j) and (j, i) contain the distant between atoms i and and the diagonal elements are all zero. Distance geometry explort conformational space by randomly generating many distance matrices, which are the converted into conformations in Cartesian space. The crucial feature about distance geometi (and the reason why it works) is that it is not possible to arbitrarily assign values to ti... 

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