Sequencing applications

V DiErancesco, J Garnier, PJ Munson. Protein topology recognition from secondary structure sequences Application of the hidden Markov models to the alpha class proteins. J Mol Biol 267 446-463, 1997. 

One can to outline a general approach for medium selection along with a test sequence applicable to a large group of filter media of the same type. There are three methods of filter media tests laboratory- or bench-scale pilot-unit, and plant tests. The laboratory-scale test is especially rapid and economical, but the results obtained are often not entirely reliable and should only be considered preliminary. Pilot-unit tests provide results that approach plant data. The most reliable results are often obtained from plant trials. 

Gueniot B, Munier-Lamy C, Berthelin J (1988b) Geochemical behavior of Uranium in soils, part 11 Distribution of uranium in hydromorphic soils and soil sequences. Application for suificial prospecting. J Geochem Explor 31 39-55... 

The following has occurred the program has found a disconnection belonging to a sequence applicable to the target molecule. This disconnection is 4.6 and is linked to 4.1. Therefore both disconnections have been applied in tandem (i.e. the fragments from the 4.6 disconnection have been in turn disconnected in line with 4.1). The intermediate precursors of the sequence can be... 

This metalloendoproteinase [EC 3.4.24.33] catalyzes the hydrolysis of Xaa—Asp, Xaa —Glu, and Xaa—cysteic acid bonds. Because of its limited specificity, this enzyme is useful in protein sequencing applications. 

Tan P, Mitchell DA, Buss TN, Holmes MA, et al. 2002. Super humanized antibodies Reduction of immunogenic potential by complementarity-determining region grafting with human germline sequences Application to an anti-CD28. J Immunol. 169 1119-1125. 

Books listed in previous chapters by van de Ven,109 Gunther,64 and Brey116 contain good descriptions of many 2D experiments. 150 and More Basic NMR Experiments—A Practical Course by S. Braun, et al.,41 described in Chapter 3, provides excellent summaries of pulse sequences, applications, and product operator descriptions of many 2D and 3D experiments. The Encyclopedia of NMR includes 16 articles specifically devoted to more detailed exposition of most of the commonly used 2D and 3D methods. 

NGS can be used for standard sequencing applications, such as genome sequencing and resequencing, and for novel applications in functional genomics research. Some examples of NGS applications currently working and in progress are shown schematically in Table 3. 

Deep sequencing application and analysis consist of two basic stages. First is processing the reads, which can be divided into two groupings based on the nucleic acid under consideration DNA-based and RNA-based (Table 2). Read... 

TABLE 2 Summary of DNA- and RNA-Based Deep Sequencing Applications ... 

S. Gawad, T. Stm, N. G. Green and H. Morgan, Impedance spectroscopy using maximum length sequences Application to single cell analysis. Rev. Sci. Instr., 78, 054301 (2007). 

For each synthon skeleton, locate in the general sequence list corresponding to its pattern of construction sites the sequences applicable to the skeletal (or-) levels of those sites. This defines for each synthon a set of all self-consistent sequences of half-reactions, their particular starting materials and their consequent product functionalities (Section 13). 

Williams, D. C. and Soper, S. A., Ultrasensitive near-IR fluorescence detection for capillary gel-electrophoresis and DNA-sequencing applications, AnaZ. Ghent., 67, 3427, 1995. 

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