Saccharomyces Genome Database

Saccharomyces Genome Database aspergillus group/MultiDo wnloads.html http //www.yeastgenome.org/... 

The term flavour will be used in its broadest sense to incorporate aroma, taste, and mouth-feel. Yeast taxonomy is according to Kurtzman and Fell (1998), with the exception of the former species Saccharomyces uvarum, for which species status is still unresolved (Nguyen and Gaillardin 2005), and will therefore be recorded as Saccharomyces species bayanus/uvarum Yeast gene and enzyme notations are according to the Saccharomyces Genome Database (http //yeastgenome.org). 

The Saccharomyces Genome Database (www.yeastgenome.org) details an extensive collection of two-hybrid screens and other large-scale protein interaction studies. 

Dwight, S.S., Harris, M.A., Dolinski, K., Bell, C.A., Binkley, G., Christie, K.R., Fisk, D.G., Issel-Tarver, L., Schroeder, M., Sherlock, G., Sethuraman, A., Weng, S., et al. 2002. Saccharomyces genome database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 30, 69-72. 

Once there is a list of predicted RNAs, the user may want to add additional annotations to the predictions. Additional fields can be added to the tabulator separated data file. Here, we demonstrate this by comparing our prediction with the known ncRNA annotation from the Saccharomyces genome database. The program rnazAnnotate.pl checks each predicted locus for overlap with an annotation file in BED format ... 

Other useful sites for yeast genome analysis include Saccharomyces cerevisiae Promoter Database, listing known regulatory elements and transcriptional factors in yeast TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces (TRIPLES) database, which tracks the expression of transposon-induced mutants and the cellular localization of transposon-tagged proteins, and the Saccharomyces Cell Cycle Expression Database, presenting the first results on changes in mRNA transcript levels dming the yeast cell cycle. 

Progress on fungal genomes has been relatively slow in comparison to bacterial genomes since the release of the Saccharomyces cerevisiae genome in 1996. Other fungal genomes currently available in public databases include... 

PathDB (table 7.1) has been under development since before 2000 at the National Center for Genome Resources. It focused originally on plant metabolism (Arabi-dopsis thaliana) but is not in principle restricted to plants, and has recently begun including yeast (Saccharomyces cerevisiae). It includes a relatively large database of compounds, proteins, reactions, and pathways, plus visualization and search/nav-igation tools. 

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