Saccharomyces cerevisiae genome

R Sanchez, A Sail. Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. Proc Natl Acad Sci USA 95 13597-13602, 1998. 

The computational approach described above has been applied to the bakers yeast Saccharomyces cerevisiae) genome, and approximately 50 known and... 

It should be possible to extend the DNA microarray-binding experiment to whole-genome analysis of transcription factor binding sites. The authors suggest that a microarray spotted with 12,000 one-kilobase sequences would span the entire Saccharomyces cerevisiae genome (Bulyk et al., 2001). Such an array could be used to characterize the sequence specificity of S. cerevisiae transcription factors. These experiments would be useful for predicting functions of previously uncharacterized transcription... 

A. Gierlik, M. Kowalczuk, P. Mackiewicz, M. R. Dudek, and S. Cebrat, Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome J. Theor. Biol. 202, 305-314 (2000). 

SDG http //genome-www.stanford.edu/Saccharomyces Saccharomyces cerevisiae genome... 

Giaever, G. et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418, 387-391. 

Wolfsberg, T. Gabrielian, A. Campbell, M.J. Cho, R. Spouge, L Landsman, D. Candidate regulatory sequence elements for cell cycle-dependent transcription in saccharomyces cerevisiae. Genome Research 1999, 9, 775-792. 

Fay, J.C., McCullough, H.L., Sniegowski, P.D., and Eisen, M.B. 2004. Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol. 5, R26.1-R26.14. 

Progress on fungal genomes has been relatively slow in comparison to bacterial genomes since the release of the Saccharomyces cerevisiae genome in 1996. Other fungal genomes currently available in public databases include... 

Page, N., Gaard-Vincent, M., Menard, P., et al. (2003). A Saccharomyces cerevisiae genome-wide mutant saeen for altered sensitivity to K1 killer toxin. Genetics, 163, 875-894. 

The function of many noncoding RNAs (ncRNAs) depend on a defined secondary structure. RNAz detects evolutionarily conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments and, thus, efficiently filters for candidate ncRNAs. In this chapter, we provide a step-by-step guide on how to use RNAz. Starting with basic concepts, we also cover advanced analysis techniques and, as an example for a large scale application, demonstrate a complete screen of the Saccharomyces cerevisiae genome. 

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