Randomly amplified polymorphic DNA analysis

Debaryomyces hansenii var. fabryii and its anamorph C. famata var. flareri were reported to be pathogenic by Vazquez et al. [223] and Nicand et al. [224]. Using random amplified polymorphic DNA analysis (RAPD-PCR), Prillinger et al. [208] considered D. hansenii ar. fabryii as a distinct species, i.e. 

Vesper SJ, Dearborn DG, Yike I, Sorenson WG, Haugland RA Hemolysis, toxicity, and randomly amplified polymorphic DNA analysis of Stachybotrys chartarum strains. Appl Environ Microbiol... 

Messner R, Prillinger H, Altmann F, Lopandic K, Wimmer K, Molnar O, Weigang F Molecular characterization and application of random amplified polymorphic DNA analysis of MraUa and Sterigmatomyces species. Int J Syst Bacteriol 1994 44 694-703. 

Lopandic K, Prillinger H, Molnar O, Gimenez-Jurado G Molecular characterization and genotypic identification of Metschnikowia species. Syst Appl Microbiol 1996 19 393-402. Molnar O, Messner R, Prillinger H, Stahl U, Slavikova E Genotypic identification of Saccharomyces species using random amplified polymorphic DNA analysis. Syst Appl Microbiol 1995 18 136-145. 

Martinez and Danielsdottir (2000) identified marine mammal species in food products by SSCP and RAPD (random amplified polymorphic DNA) analysis. SSCP using nuclear and mitochondrial genes allowed differentiation between partridge... 

Random amplified polymorphic DNA analysis is one method used for the same purpose but based on the utilization of short arbitrary (about 10 bases) primers yielding a number of electrophoretic species-specific amplification products for given reaction conditions. The method was applied in species determination in foods, especially in meat products [52]. 

Corroler, D., Desmasures, N., Gueguen, M. (1998). Correlation between polymerase chain reaction analysis of the histidine biosynthesis operon, randomly amplified polymorphic DNA analysis and phenotypic characterization of dairy Lactococcus isolates. Applied and... 

Binetti, A.G., Suarez, V., Tailliez, R, and Reinheimer, J.A. (2007) Characterization of spontaneous phage-resistant variants of Streptococcus thermophilus by randomly amplified polymorphic DNA analysis and identification of phage-resistance mechanisms. Int Dairy J17,1115-1122. 

Bandi, C., La Rosa, G., Bardin, M.G., Damiani, G., Comincini, S., Tasciotti, L. and Pozio, E. (1995) Random amplified polymorphic DNA fingerprints of the eight taxa of Trichinella and their comparison with allozyme analysis. Parasitology 110, 401-407. 

Felleisen, R.S.J. (1998) Comparative genetic analysis of trichomonadid protozoa by the random amplified polymorphic DNA technique. Parasitobgy Research 84, 153-156. 

Siles-Lucas, M., Felleisen, R., Cuesta-Bandera, C., Gottstein, B. and Eckert, J. (1994) Comparative genetic analysis of Swiss and Spanish isolates of Echinococcus granulosus by Southern blot hybridisation and random amplified polymorphic DNA technique. Applied Parasitology 35, 107-117. 

Cunningham, C.O. and Mo, T.A. (1997) Random amplified polymorphic DNA (RAPD) analysis of three Norwegian populations of Gyrodactylus salaris (Monogenea Gyrodactylidae). Journal of Parasitology 83, 311-314. 

Detailed Protocol for Gel Analysis of Randomly Amplified Polymorphic DNA Reactions... 

Williams, J.G. et al.. Genetic analysis using random amplified polymorphic DNA markers, Meth. Enzymol. 218, 704, 1993. 

Rehbein H (1997). Comparison of several types of precast polyacrylamide gels for fish species identification by DNA analysis (single strand conformation polymorphism, and random amplified polymorphic DNA). Arch. Lebensmittelhyg., 48 41-43. 

Coton et al. (2005b) developed a PCR-based amplified ribosomal DNA restriction analysis method for rapid detection of Zymomonas at the subspecies level. A further duplex PCR method with primers specihc for 23S rRNA gene for detection of Zymomonas species has been developed (Coton et al., 2005b). This method could detect Zymomonas species within 24 h with sensitivity of 10 CFU/ml (Coton et al., 2005b). Coton, Laplace, Auffray, and Coton (2006) characterised several strains of Z. mobilis with random amplified polymorphic DNA (Table 8.3). 

Identification of the species and characterization of the dominant strains in static surface acetic acid fermentation were required for the stabilization of fermentation procedures and improvement of the strain. Recent advances of genetic analyses including DNA—DNA hybridization, enterobacterial repetitive intergenic consensus (ERlC)-polymerase chain reaction (PCR) and repetitive extragenic palindromic (REP)-PCR, random amplified polymorphic DNA (RAPD), and 16S rRNA sequence analysis with PCR-denaturing gradient gel electrophoresis (DGGE) methods allow identificatiOTi of species of acetic acid bacteria. 

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