Protein separation methods

Wall, D. B Kachman, M. T Gong, S. Y. S Parus, S. J Long, M. W Lubman, D. M. (2001). Isoelectric focusing nonporous silica reversed-phase high-performance liquid chromatog-raphy/electrospray ionization time-of-flight mass spectrometry a three-dimensional liquid-phase protein separation method as applied to the human erythroleukemia cell-line. Rapid Commun Mass Sp. 15(18), 1649-1661. 

Sluyterman, L. (1982). Chromatofocusing A Preparative Protein Separation Method, TIBS 1 168-170. 

The analysis of proteins, whether on a small or large scale, requires methods for the separation of protein mixtures into their individual components. Protein separation methods can be placed on a sliding scale from fully selective to fully nonselective. Selective methods aim to isolate individual proteins from a mixture usually by exploiting very specific properties such as their binding specificity or biochemical function. In contrast, nonselective separation methods aim to take a complex protein mixture and fractionate it in such a manner that all the individual proteins, or at least a substantial subfraction, are available for further analysis. Such methods lie at the heart of proteomics and exploit very general properties of proteins, such as their mass or net charge. 

N. Catsimpoolas, Methods of Protein Separation, Plenum Press, New York, 1975. 

The hydrophilic surface characteristics and the chemical nature of the polymer backbone in Toyopearl HW resins are the same as for packings in TSK-GEL PW HPLC columns. Consequently, Toyopearl HW packings are ideal scaleup resins for analytical separation methods developed with TSK-GEL HPLC columns. Eigure 4.44 shows a protein mixture first analyzed on TSK-GEL G3000 SWxl and TSK-GEL G3000 PWxl columns, then purified with the same mobile-phase conditions in a preparative Toyopearl HW-55 column. The elution profile and resolution remained similar from the analytical separation on the TSK-GEL G3000 PWxl column to the process-scale Toyopearl column. Scaleup from TSK-GEL PW columns can be direct and more predictable with Toyopearl HW resins. 

The second example is the SE-HPLC analysis of recombinant hGH. In this example, SE-HPLC is used for both a purity and a protein concentration method for bulk and formulated finished products. This method selectively separates both low molecular weight excipient materials and high molecular weight dimer and aggregate forms of hGH from monomeric hGH, as shown... 

Separation methods based on size include size exclusion chromatography, ultra-filtration, and ultracentrifugation (see Chapter Appendix). The ionic properties of peptides and proteins are determined principally by their complement of amino acid side chains. Furthermore, the ionization of these groups is pH-dependent. 

The natural world is one of eomplex mixtures petroleum may eontain 10 -10 eomponents, while it has been estimated that there are at least 150 000 different proteins in the human body. The separation methods necessary to cope with complexity of this kind are based on chromatography and electrophoresis, and it could be said that separation has been the science of the 20th century (1, 2). Indeed, separation science spans the century almost exactly. In the early 1900s, organic and natural product chemistry was dominated by synthesis and by structure determination by degradation, chemical reactions and elemental analysis distillation, liquid extraction, and especially crystallization were the separation methods available to organic chemists. 

Separation methods, multichromato-graphic la 56 Serine la 246,356 lb 132 Serotonin la 70,76,239,240,262,355, 380 lb 37-39,231,243,348 Serotonin metabolites lb 327 Serum lipids la 89 Serum proteins la 74 Sesquiterpene derivatives lb 239,446 Sesquiterpene esters lb 239 Sesquiterpene glucosides la 327 Sesquiterpene lactones lb 448 Sevin lb 387-389 Si 50 000, specific surface area la 91 Silica gel, caffeine-impregnated la 85 -, surface modified la 3 Silica gel 60, specific surface area la 91... 

Rodbard, D, Estimation of Molecular Weight by Gel Filtration and Gel Electrophoresis I. Mathematical Principles. In Methods of Protein Separation Catsimpoolas, N. ed. Plenum Press New York, 1976 Vol. 2, p 145. 

Carbohydrates play a major role in protein bioactivity, bioavailability, and antigenicity therefore, the understanding of the glycosylation of protein molecules is very important in the development of effective glycoprotein therapeutics.172 In recent years, there has been considerable activity in the development of simple, rapid, and reliable separation methods for the analysis of... 

The second step in 2D electrophoresis is to separate proteins based on molecular weight using SDS-PAGE. Individual proteins are then visualized by Coomassie or silver staining techniques or by autoradiography. Because 2D gel electrophoresis separate proteins based on independent physical characteristics, it is a powerful means to resolve complex mixtures proteins (Fig. 2.1). Modem large-gel formats are reproducible and are the most common method for protein separation in proteomic studies. 

Capillary zone electrophoresis, an up-to-date high resolution separation method useful for proteins and peptides, has been shown to be a useful method for determining electrophoretic mobilities and diffusion coefficients of proteins [3], Diffusion coefficients can be measured from peak widths of analyte bands. The validity of the method was demonstrated by measuring the diffusion coefficients for dansylated amino acids and myoglobin. 

Wall, D. B. Kachman, M. T. Gong, S. Hinderer, R. Paras, S. Misek, D. E. Hanash, S. M. Lubman, D. M. Isoelectric focusing nonporous RP HPLC A two-dimensional liquid-phase separation method for mapping of cellular proteins with identification using MALDI-TOF mass spectrometry. Anal. Chem. 2000, 72, 1099-1111. 

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