Polymers secondary structure

The ICD of the dyes bound to saccharides through an ionic coupling or hydrophobic interaction may remain a conflicting problem. The side-chain chromophores covalently bound to saccharides permit CD bands in the far or near ultraviolet region. These side-chain chromophores can exhibit CD and thus provide more definitive information on the conformation of saccharide moieties. Thus, acetamide CD has been observed to reflect polymer secondary structure of glycosaminoglycans, which are the connective-tissue proteoglycans. 

Keywords High-precision polymer Secondary structure Self-assembly Sequence-specific polymer Synthetic biology Tertiary structure... 

The three levels of structure listed above are also useful categories for describing nonprotein polymers. Thus details of the microstructure of a chain is a description of the primary structure. The overall shape assumed by an individual molecule as a result of the rotation around individual bonds is the secondary structure. Structures that are locked in by chemical cross-links are tertiary structures. 

Secondary Structure. The silkworm cocoon and spider dragline silks are characterized as an antiparaHel P-pleated sheet wherein the polymer chain axis is parallel to the fiber axis. Other silks are known to form a-hehcal (bees, wasps, ants) or cross- P-sheet (many insects) stmctures. The cross-P-sheets are characterized by a polymer chain axis perpendicular to the fiber axis and a higher serine content. Most silks assume a range of different secondary stmctures during processing from soluble protein in the glands to insoluble spun fibers. 

Fibrous proteins can serve as structural materials for the same reason that other polymers do they are long-chain molecules. By cross-linking, interleaving and intertwining the proper combination of individual long-chain molecules, bulk properties are obtained that can serve many different functions. Fibrous proteins are usually divided in three different groups dependent on the secondary structure of the individual molecules coiled-coil a helices present in keratin and myosin, the triple helix in collagen, and P sheets in amyloid fibers and silks. 

However, the relaxation process is rather slow whereas thermoplast processing calls for almost instantaneous cooling of the melt after molding and due to this fact the chain structure is not restored. From this it follows that in molding a conducting polymer composite the cooling of the melt should have a speed comparable to the speed of restoration of the filler secondary structure, otherwise the conductivity of the polymer composite will be reduced. 

Optical rotation and circular dichroism have been used for die characterization of optically active polymers. They have been used to determine whether polymers are optically active and whether a secondary structure such as a helix exists. 

Proteins are polymers made of amino acid units. The primary structure of a polypeptide is the sequence of amino acid residues secondary structure is the formation of helices and sheets tertiary structure is the folding into a compact unit quaternary structure is the packing of individual protein units together. 

Before analyzing in detail the conformational behaviour of y9-peptides, it is instructive to look back into the origins and the context of this discovery. The possi-bihty that a peptide chain consisting exclusively of y9-amino acid residues may adopt a defined secondary structure was raised in a long series of studies which began some 40 years ago, on y9-amino acid homopolymers (nylon-3 type polymers), such as poly(/9-alanine) 3 [14, 15], poly(y9-aminobutanoic acid) 4 [16-18], poly(a-dialkyl-/9-aminopropanoic acid) 5 ]19], poly(y9-L-aspartic acid) 6 ]20, 21], and poly-(a-alkyl-/9-L-aspartate) 7 [22-36] (Fig. 2.1). 

The essential distinction between the approaches used to formulate and evaluate proteins, compared with conventional low molecular weight drugs, lies in the need to maintain several levels of protein structure and the unique chemical and physical properties that these higher-order structures convey. Proteins are condensation polymers of amino acids, joined by peptide bonds. The levels of protein architecture are typically described in terms of the four orders of structure [23,24] depicted in Fig. 2. The primary structure refers to the sequence of amino acids and the location of any disulfide bonds. Secondary structure is derived from the steric relations of amino acid residues that are close to one another. The alpha-helix and beta-pleated sheet are examples of periodic secondary structure. Tertiary... 

A consequence of tacticity/stereoregularity is the production of regular helical coiling of the polymer chain. Helical coiling is a secondary structure for synthetic polymers associated with the primary structure of the tactic sequence. Using IR spectroscopy, it has been possible to assign some unique bands to... 

Certain difficulties remain, however, with this approach. First, such an important feature as a secondary structure did not find its place in this theory. Second, the techniques of sequence design ensuring exact reproduction of the given conformation are well developed only for lattice models of polymers. The existing techniques for continuum models are complex, intricate, and inefficient. Yet another aspect of the problem is the necessity of reaching in some cases beyond the mean field approximation. The first steps in this direction were made in paper [84], where an analog of the Ginzburg number for the theory of heteropolymers was established. 

Solid state 2H NMR parameters are almost exclusively governed by the quadrupole interaction with the electric field gradient (EFG) tensor at the deuteron site.1 8 The EFG is entirely intramolecular in nature. Thus molecular order and mobility are monitored through the orientation of individual C-2H bond directions. Therefore, 2H NMR is a powerful technique for studying local molecular motions. It enables us to discriminate different types of motions and their correlation times over a wide frequency range. Dynamics of numerous polymers has been examined by solid state 2H NMR.1 3,7,9 Dynamic information on polypeptides by NMR is however limited,10 26 although the main-chain secondary structures of polypeptides in the solid have been extensively evaluated by 13C and 15N CP/MAS NMR.27,28... 

Novolac resins, as the oldest synthetic polymers, have played an important role 1n microelectronic Industry as positive photoresists. Studies of novolac dissolution have populated the literature a recent survey shows that the rate of dissolution 1s influenced by the concentration of the alkali, size of the cation, addition of salt, and the presence of dissolution Inhibitors (1-6). The voluminous experimental results, however, have not led to a clear understanding of the dissolution phenomena. Arcus (3) proposed an 1on-permeab1e membrane" model while Szmanda (1) and Hanabata (6) emphasized the Importance of secondary structures of novolac molecules, for Instance, Inter- or Intramolecular hydrogen bonding and the various isomeric configurations of the resins. These important contributions nevertheless point to a need for additional studies of the mechanism of dissolution. 

This means that the isopropyl group stabilises the secondary ion sufficiently (compared to but-l-ene) for hydride transfer reactions to be suppressed, at least at low temperature. At about -120 °C a high polymer of structure (IV) is formed. This is a true phantom polymer, since there exists no corresponding monomer. Evidently, at the very low temperature the propagation reaction which would lead to structure (III) becomes much slower than the isomerization reaction ... 

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