Poly proteins

Electrophoresis agarose, poly- Protein composition acrylamide gel, cellulose acetate... 

Recently, Koskinen et al. (2011) described the approach that seeks to present DB search results in a more logical format , that is, by creating a minimal set of proteins, grouped into families on the basis of shared peptide matches and by using hierarchical clustering with scores of non-shared peptide matches as a distance metric. This approach is very similar to that used by BacID/ABOid software (Dworzanski et al. 2006, 2010 Deshpande et al. 2011) for presenting DB search results of unknown microbial strains represented as pseudo-poly proteins. Unfortunately,... 

A polymer is a macromolecule that is constructed by chemically linking together a sequent of molecular fragments. In simple synthetic polymers such as polyethylene or polystyrer all of the molecular fragments comprise the same basic unit (or monomer). Other poly me contain mixtures of monomers. Proteins, for example, are polypeptide chains in which eac unit is one of the twenty amino acids. Cross-linking between different chains gives rise to j-further variations in the constitution and structure of a polymer. All of these features me affect the overall properties of the molecule, sometimes in a dramatic way. Moreover, or... 

Dichromated Resists. The first compositions widely used as photoresists combine a photosensitive dichromate salt (usually ammonium dichromate) with a water-soluble polymer of biologic origin such as gelatin, egg albumin (proteins), or gum arabic (a starch). Later, synthetic polymers such as poly(vinyl alcohol) also were used (11,12). Irradiation with uv light (X in the range of 360—380 nm using, for example, a carbon arc lamp) leads to photoinitiated oxidation of the polymer and reduction of dichromate to Ct(III). The photoinduced chemistry renders exposed areas insoluble in aqueous developing solutions. The photochemical mechanism of dichromate sensitization of PVA (summarized in Fig. 3) has been studied in detail (13). 

It is evident that the area of water-soluble polymer covets a multitude of appHcations and encompasses a broad spectmm of compositions. Proteins (qv) and other biological materials ate coveted elsewhere in the Eniyclopedia. One of the products of this type, poly(aspartic acid), may be developed into interesting biodegradable commercial appHcations (70,71). 

Two-Phase Aqueous Extraction. Liquid—Hquid extraction usually involves an aqueous phase and an organic phase, but systems having two or more aqueous phases can also be formed from solutions of mutually incompatible polymers such as poly(ethylene glycol) (PEG) or dextran. A system having as many as 18 aqueous phases in equiHbrium has been demonstrated (93). Two-phase aqueous extraction, particularly useful in purifying biological species such as proteins (qv) and enzymes, can also be carried out in combination with fermentation (qv) so that the fermentation product is extracted as it is formed (94). 

Membrane Sep r tion. The separation of components ofhquid milk products can be accompHshed with semipermeable membranes by either ultrafiltration (qv) or hyperfiltration, also called reverse osmosis (qv) (30). With ultrafiltration (UF) the membrane selectively prevents the passage of large molecules such as protein. In reverse osmosis (RO) different small, low molecular weight molecules are separated. Both procedures require that pressure be maintained and that the energy needed is a cost item. The materials from which the membranes are made are similar for both processes and include cellulose acetate, poly(vinyl chloride), poly(vinyHdene diduoride), nylon, and polyamide (see AFembrane technology). Membranes are commonly used for the concentration of whey and milk for cheesemaking (31). For example, membranes with 100 and 200 p.m are used to obtain a 4 1 reduction of skimmed milk. 

Biomaterials with Low Thrombogenicity. Poly(ethylene oxide) exhibits extraordinary inertness toward most proteins and biological macromolecules. The polymer is therefore used in bulk and surface modification of biomaterials to develop antithrombogenic surfaces for blood contacting materials. Such modified surfaces result in reduced concentrations of ceU adhesion and protein adsorption when compared to the nonmodifted surfaces. 

One particular type of polyamide produced from intermediates containing lateral side groups are the poly-(a-amino acids). The a-amino acids have the structure shown in Figure 18.23 (I) and give polymers of the type shown in Figure 18.23 (II). The proteins may be considered as a special class of such... 

A number of examples have been studied in recent years, including liquid sulfur [1-3,8] and selenium [4], poly(o -methylstyrene) [5-7], polymer-like micelles [9,11], and protein filaments [12]. Besides their importance for applications, EP pose a number of basic questions concerning phase transformations, conformational and relaxational properties, dynamics, etc. which distinguish them from conventional dead polymers in which the reaction of polymerization has been terminated. EP motivate intensive research activity in this field at present. 

Amphoteric hydrophilic Peptides, proteins, poly and oligosaccharides, DNA, RNA Buffer or salt solution (e.g., 0.1 M NaNO,)... 

FIGURE 4.50 FVjrifIcation of mRNA on Toyopearl HW-65F. Column Toyopearl HW-65F. 25 mm X 90 cm. Sample 40 mg of poly(A) RNA/5 ml of formamide, sample from silkworm. Elution 20 mA1 sodium citrate, 5 mM EDTA, 0.5% SDS, 6 M urea, pH 3.5. Flow rate 24 ml/hr. Detection UV at 254, total mRNA activity (—), mRNA activity for major plasma proteins (------------). 

In one of the early experiments designed to elucidate the genetic code, Marshall Nirenberg of the U.S. National Institutes of Health (Nobel Prize in physiology or medicine, 1968) prepared a synthetic mRNA in which all the bases were uracil. He added this poly(U) to a cell-free system containing all the necessary materials for protein biosynthesis. A polymer of a single amino acid was obtained. What amino acid was polymerized ... 

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