Plant type, amino acid

Abstract Polyamine (PA) transport has been analyzed at the ceU and organ levels in several plant species, but currently the molecular mechanisms of PA transport are not completely understood. Several papers recently identified plant PA transporters. A study of Arabidopsis oxidative stress responses to the herbicide paraquat (PQ) identified a LAT (L-type amino acid transporter) family protein as a transporter of both PQ and PA. Other studies based on yeast complementation analyses revealed that LAT family genes in rice md Arabidopsis function as PA transporters. 

Early investigators grouped alkaloids according to the plant families in which they are found, the stmctural types based on their carbon framework, or their principal heterocycHc nuclei. However, as it became clear that the alkaloids, as secondary metaboUtes (30—32), were derived from compounds of primary metabohsm (eg, amino acids or carbohydrates), biogenetic hypotheses evolved to link the more elaborate skeletons of alkaloids with their simpler proposed pregenitors (33). These hypotheses continue to serve as valuable organizational tools (7,34,35). 

In more recent times chemically defined basal media have been elaborated, on which the growth of various lactic acid bacteria is luxuriant and acid production is near-optimal. The proportions of the nutrients in the basal media have been determined which induce maximum sensitivity of the organisms for the test substance and minimize the stimulatory or inhibitory action of other nutrilites introduced with the test sample. Assay conditions have been provided which permit the attainment of satisfactory precision and accuracy in the determination of amino acids. Experimental techniques have been provided which facilitate the microbiological determination of amino acids. On the whole, microbiological procedures now available for the determination of all the amino acids except hydroxy-proline are convenient, reasonably accurate, and applicable to the assay of purified proteins, food, blood, urine, plant products, and other types of biological materials. On the other hand, it is improbable that any microbiological procedure approaches perfection and it is to be expected that old methods will be improved and new ones proposed by the many investigators interested in this problem. 

Polar organic compounds such as amino acids normally do not polymerize in water because of dipole-dipole interactions. However, polymerization of amino acids to peptides may occur on clay surfaces. For example, Degens and Metheja51 found kaolinite to serve as a catalyst for the polymerization of amino acids to peptides. In natural systems, Cu2+ is not very likely to exist in significant concentrations. However, Fe3+ may be present in the deep-well environment in sufficient amounts to enhance the adsorption of phenol, benzene, and related aromatics. Wastes from resinmanufacturing facilities, food-processing plants, pharmaceutical plants, and other types of chemical plants occasionally contain resin-like materials that may polymerize to form solids at deep-well-injection pressures and temperatures. 

Alkaloids are compounds that contain nitrogen in a heterocyclic ring and are commonly found in about 15-20% of all vascular plants. Alkaloids are subclassified on the basis of the chemical type of their nitrogen-containing ring. They are formed as secondary metabolites from amino acids and usually present a bitter taste accompanied by toxicity that should help to repel insects and herbivores. Alkaloids are found in seeds, leaves, and roots of plants such as coffee beans, guarana seeds, cocoa beans, mate tea leaves, peppermint leaves, coca leaves, and many other plant sources. The most common alkaloids are caffeine, theophylline, nicotine, codeine, and indole... 

The term "structural genomics" is used to describe how the primary sequence of amino acids in a protein relates to the function of that protein. Currently, the core of structural genomics is protein structure determination, primarily by X-ray crystallography, and the design of computer programs to predict protein fold structures for new proteins based on their amino acid sequences and structural principles derived from those proteins whose 3-dimensional structures have been determined. Plant natural product pathways are a unique source of information for the structural biologist in view of the almost endless catalytic diversity encountered in the various pathway enzymes, but based on a finite number of reaction types. Plants are combinatorial chemists par excellence, and understanding the principles that relate enzyme structure to function will open up unlimited possibilities for the... 

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