Nucleic acid length

Random priming often replaces nick-translation since higher specific activity can be obtained, label is used more efficiently and the reaction is better controlled amount of DNA increases during labeling requires ss or denatured nucleic acid, length of probes is variable and less homogeneous than with nick-translation... 

EMBL (European Molecular Biology Laboratory) [33] is a nucleotide sequence database provided from the online host EBl. Release 73 (December, 2002) consists of over 20 million nucleotide sequences with more than 28 billion nucleotides. The information includes sequence name, species, sequence length, promoter, taxonomy, and nucleic acid sequence. 

ChemSketch has some special-purpose building functions. The peptide builder creates a line structure from the protein sequence defined with the typical three-letter abbreviations. The carbohydrate builder creates a structure from a text string description of the molecule. The nucleic acid builder creates a structure from the typical one-letter abbreviations. There is a function to clean up the shape of the structure (i.e., make bond lengths equivalent). There is also a three-dimensional optimization routine, which uses a proprietary modification of the CHARMM force field. It is possible to set the molecule line drawing mode to obey the conventions of several different publishers. 

A2) In spite of the high individual frequencies, bond length and bond angle vibrations participate in quasi-classical low frequency collective normal modes. Bond angle bending is necessary for the flexibility of five-membered rings, which plays a key role in the polymorphism of nucleic acids. 

Figure 3 The underlying tree of a furanose ring in nucleic acids. Atoms are numbered 1,. . . , 5 corresponding to the natural tree ordering. All bond lengths are fixed. Arrows illustrate five internal coordinates that determine the ring conformation.

A great deal of our knowledge about the interior of solids has come from x-ray diffraction. This important technique is used to determine the arrangement of atoms in solid compounds and to measure bond lengths and angles. Almost all recent advances in molecular biology have stemmed from the application of this technique to determine the structures of molecules such as proteins and nucleic acids. 

C. G., Janowski B.A., Corey D. R. Inhibition of gene expression inside cells by peptide nucleic acids effect of mRNA target sequence, mismatched bases, and PNA length. Biochemistry 2001 40 53-64. 

Kim, Y Morris, MD, Pulsed Field Capillary Electrophoresis of Multikilobase Length Nucleic Acids in Dilute Methyl Cellulose Solutions, Analytical Chemistry 66, 3081, 1994. 

Some virus particles have their protein subunits symmetrically packed in a helical array, forming hollow cylinders. The tobacco mosaic virus (TMV) is the classic example. X-ray diffraction data and electron micrographs have revealed that 16 subunits per turn of the helix project from a central axial hole that runs the length of the particle. The nucleic acid does not lie in this hole, but is embedded into ridges on the inside of each subunit and describes its own helix from one end of the particle to the other. 

Nucleotides and nucleic acids are critical tools in the areas of gene expression, therapeutics, and diagnostics. However, there are certain challenges associated with their large-scale purification and subsequent characterization. While solid-state oligonucleotide synthesis is relatively simple and can be totally automated, intra- and intermolecular associations may occur involving shorter sequences that may hybridize with the desired full length... 

PCR and related target amplification systems typically employ a single pair of primers. Each primer is usually 20 to 40 bases in length and anneals to the complementary sequence on the target nucleic acid to initiate the amplification reac-... 

A typical virus with helical symmetry is the tobacco mosaic virus (TMV). This is an RNA virus in which the 2130 identical protein subunits (each 158 amino acids in length) are arranged in a helix. In TMV, the helix has 16 1/2 subunits per turn and the overall dimensions of the virus particle are 18 X 300 nm. The lengths of helical viruses are determined by the length of the nucleic acid, but the width of the helical virus particle is determined by the size and packing of the protein subunits. 

---