Mass spectrometry performance improvement

Kertesz, V., Van Berkel, C. J. (2008) Improved desorption electrospray ionization mass spectrometry performance using edge sampling and a rotational sample stage. Rapid Commun Mass Spectrom, 22, 3846-3850. 

Mass Spectrometry (MS). MS is one of the key techniques used in structure determination of carbohydrates and analyses via electron impact (E.I.) and chemical ionization (C.I.) methods are performed routinely on low molecular weight permethylated or peracetylated carbohydrates. Recently, MS procedures have found wider application in the structure elucidation of less volatile higher molecular weight oligosaccharides as a result of instrumental developments (in particular, desorption methods of ionization, based on fast atom bombardment (FAB) (93), field desorption (FD), laser desorption (LD), plasma desorption (PD), and secondary ion (SI) mass spectrometry) and improvements in derivatization techniques. For example, a series of malto-oligosaccharides, starch and other glycans have been examined with LD FD-MS (94,95) whilst FAB techniques have been employed for studies of cello- and malto-oligosaccharides (96) and branched cyclo-dextrins (97). 

The development of new fiber coatings in the near future should further improve the specificity of SPME and overcome some of the observed matrix effects. Quantification by stable isotope dilution gas chromatography/mass spectrometry (GC/MS) may assist in improving analytical performance. Along with the possible application of micro LC and capillary LC columns to in-tube SPME, the development of novel derivatization methods and the potential for the analysis of fumigant pesticides, SPME appears to be a technique with a future in the analysis of pesticide residues in food. 

A different strategy has been applied in our work, that emphasizes the importance of DNA stability on hole transfer within double-stranded DNA. This work is based on determination of the overall yield of oxidized nucleosides that arise from the conversion of initially generated purine and pyrimidine radical cations within DNA exposed to two-photon UVC laser pulses. On the one hand, this work benefits from the excellent current knowledge of chemical reactions involving the radical cations of DNA bases, and on the other hand, from major analytical improvements that include recent availability of the powerful technique of high performance liquid chromatography-electrospray ionization-tandem mass spectrometry (CLHP-ESI-MS/MS) [16-18]. 

Winkler, P.C. Perkins, D.D. Williams, D.K. Browner, R.F. Performance of an Improved Monodisperse Aerosol Generation Interface for Liquid Chromatography/Mass Spectrometry. Anal. Chem. 1988,60,489-493. 

Belov ME, Gorshkov MV, Anderson GA, Udseth HR, Smith RD. 1999. On improving the performance of a FT-ICR mass spectrometer with an external accumulation device. Proceedings of the 47th ASMS Conference on Mass Spectrometry and Allied Topics, pp. 767—768. 

As binding assays provide a means to characterize the affinity of test compounds to defined targets, they play a very important, not to say an essential role in the drug discovery process. Next to the advantage of effective quantitation, the use of a marker, i.e. a labeled ligand - either with a radioisotope or a fluorophore - has, however, also serious immanent disadvantages. As the performance of mass spectrometry continues to improve, it appears therefore obvious to conduct... 

The majority of H/D studies that have been reported employ quadrupole ion trap (QIT) instruments due to their ease of use, excellent sensitivity, ability to perform MS/MS experiments, compact size, and low cost. Other reports discuss the use of instruments with higher mass-resolving power such as the hybrid QqTOF instruments [47]. A few groups have utilized FT-ICR mass spectrometry, which offers ultra-high mass-resolving power and improved mass accuracy [48, 49]. 

From a DMPK perspective, a common goal is to be able to compare multiple compounds based on their absorption, distribution, metabolism and excretion (ADME) properties as well their preclinical PK properties [8, 12-22]. Therefore, lead optimization typically is performed as an iterative process that uses the DMPK data to select structural modifications that are then tested to see whether the DMPK properties of the series have been improved. This iterative process is shown schematically in Fig. 13.2. Clearly an important element for the successful lead optimization of a series of NCEs is the ability to perform the DMPK assays in a higher throughput manner. The focus of this chapter will be to discuss ways that mass spectrometry (MS), particularly HPLC-MS/MS can be used to support the early PK studies for NCEs in a higher throughput manner. 

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