Steric effect intermolecular forces

Studies of the molar volumes of perdeuteriated organic compounds might be expected to be informative about non-bonded intermolecular forces and their manifestations, and such studies might be considered to obviate the necessity of investigating steric isotope effects in reacting systems. The results from non-reacting systems could then be simply applied to the initial and transition states in order to account for a kinetic steric isotope effect. 

Electrical effects are the major factor in chemical reactivities and physical properties. Intermolecular forces are usually the major factor in bioactivities. Either electrical effects or intermolecular forces may be the predominant factor in chemical properties. Steric effects only occur when the substituent and the active site are in close proximity to each other and even then rarely account for more than twenty-five percent of the overall substituent effect. 

Examples of the application of correlation analysis to diene and polyene data sets are considered below. Both data sets in which the diene or polyene is directly substituted and those in which a phenylene lies between the substituent and diene or polyene group have been considered. In that best of all possible worlds known only to Voltaire s Dr. Pangloss, all data sets have a sufficient number of substituents and cover a wide enough range of substituent electronic demand, steric effect and intermolecular forces to provide a clear, reliable description of structural effects on the property of interest. In the real world this is not often the case. We will therefore try to demonstrate how the maximum amount of information can be extracted from small data sets. 

The use of sterlo parameters such as and of methods such as the branching equations to represent sterlo effects on bio-activity Is Justified. Transport parameters are composite they are a function of differences In Intermolecular forces. The function of bulk and area parameters Is to provide the proper mix of Intennol-eoular forces required by a particular mode of bloaotlvlty. In the absence of parabolic or bilinear behavior bloactlv-Ity can be modeled by an equation based on Intermolecular forces and steric effects. 

Structural effects are of three types Electrical effects, steric effects and intermolecular force effects. Each of these types can be subdivided into various contributions. 

In the second step the bas is recognized by the receptor site and the bas-rep complex forms. As was noted above, the complex is generally bonded by inter-molecular forces. The bas is transferred from an aqueous phase to the receptor site. The receptor site is very much more hydrophobic than is the aqueous phase. It follows, then, that complex formation depends on the difference in intermolecular forces between the bas-aqueous phase and the bas-receptor site. The importance of a good fit between bas and receptor site has been known for many years. The configuration and conformation of the bas can be of enormous importance. Also important is the nature of the receptor. If the receptor is. a cleft, as is the case in some enzymes, steric effects may be maximal as it may not be possible for a substituent to relieve steric strain by rotating into a more favorable conformation. In such a system, more than one steric parameter will very likely be required in order to account for steric effects in different directions. Alternatively, the receptor may resemble a bowl, or a shallow, fairly flat-bottomed dish. Conceivably it may also be a mound. In a bowl or dish, steric effects are likely to be very different from those in a cleft. Possible examples are shown in Fig. 1, 2, and 3. 

A substrate binds an enzyme at the active site. Substrate-enzyme binding is based on weak intermolecular attractions contact forces, dipole forces, and hydrogen bonding. Steric effects also play an important role because the substrate must physically fit into the active site. Some enzymes have confined active sites, while others are open and accessible. A restricted active site can lead to high selectivity for a specific substrate. Low specificity can be advantageous for some enzymes, particularly metabolic and digestive enzymes that need to process a broad range of compounds with a variety of structures. Because enzymes are composed of chiral amino acids, enzymes interact differently with stereoisomers, whether diastereomers or enantiomers. 

Ibis hindered rotation of >f2-H2 is governed by various forces, which can be divided into bonded (electronic) and nonbonded interactions ( steric effects). The direct electronic interaction between M and H2 results from overlap of the appropriate molecular orbitals. Nonbonded interactions such as van der Waals forces between the q2-H2 atoms and the other atoms on the molecule may vary as 2- 2 rotates. Intermolecular interactions should not contribute much to the barrier to rotation of q2-H2, as the metals are far apart. However, they may have a minor effect on the coordination geometry about M, which could in turn affect M-H2 binding. 

Recall from our earlier discussion that intermolecular bonding in polymers is due to secondary attractive forces. Consequently, it is to be expected that the presence of strong intermolecular bonds in a polymer chain, i.e., a high value of cohesive energy density, will significantly increase Tg. The effect of polarity, for example, can be seen from Table 4.6. The steric effects of the pendant groups in series (CHj, -Cl,... 

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