Hydrolases catalyzed

Enzymes are classified into six categories depending on the kind of reaction they catalyze, as shown in Table 26.2. Oxidoreductases catalyze oxidations and reductions hansferases catalyze the transfer of a group from one substrate to another hydrolases catalyze hydrolysis reactions of esters, amides, and related substrates lyases catalyze the elimination or addition of a small molecule such as H2O from or to a substrate isomerases catalyze isomerizalions and ligases catalyze the bonding together of two molecules, often coupled with the hydrolysis... 

Figure 6.4 Hydrolase-catalyzed desymmetrization of a prochiral (a), a meso (b), or a centrosymmetric (c) substrate.

Hydrolases catalyze the hydrolytic cleavage of C—C, C—O, C—N, P—O, and certain other bonds, including acid anhydride bonds. 

Chiappe, C., Leandri, E., Hammock, B.D. and Morisseau, C. (2007) Effect of ionic liquids on epoxide hydrolase-catalyzed synthesis of chiral 1,2-diols. Green Chemistry, 2007 (9), 162-168. 

Next to reactions catalyzed by transaminases, hydrolase-catalyzed reactions also lead to limitations regarding the equilibrium. This problem occurs during ester synthesis, because this condensation reaction produces water. The equilibrium is shifted by high amounts of water towards the reactants therefore, an efficient removal is necessary to reach high conversions. Here, two process setups of Unichema Chemie B V will be discussed illustrating in situ product removal [41]. The first setup is based on azeotropic distillation of the water produced... 

It was shown that microsomal epoxide hydrolase-catalyzed trans-addition of water to BaP 9,10-epoxide occurs stereospecifically at the C-9 position (15). Since BaP is metabolized essentially to an optically pure 9R,10R-dihydrodiol (13 and L5 Table I), the 9,10-epoxide formed in BaP metabolism must have 9S,10R absolute stereochemistry (Figure 1). Similarly, the 7,8-epoxide formed in BaP metabolism is hydrated specifically at the C-8 position to form the 7R,8R-dihydrodiol (14.21). Hence the enzymatically formed 7,8-epoxide intermediate has 7R,8S absolute stereochemistry (Figure 1). Although the 7R,8R-dihydrodiol is formed almost exclusively from BaP metabolism in rat liver microsomes (Table I) and in bovine bronchial explants (25). the 7S,8S-dihydrodiol is also formed from BaP metabolism in mouse skin epidermis in vivo (5). 

In contrast to the metabolism of BA and BaP, the 5,6-dihydrodiols formed in the metabolism of DMBA by liver microsomes from untreated, phenobarbital-treated, and 3-methylcholanthrene-treated rats are found to have 5R,6R/5S,6S enantiomer ratios of 11 89, 6 94, and 5 95, respectively (7.49 and Table II). The enantiomeric contents of the dihydrodiols were determined by a CSP-HPLC method (7.43). The 5,6-epoxide formed in the metabolism of DMBA by liver microsomes from 3MC-treated rats was found to contain predominantly (>97%) the 5R,6S-enantiomer which is converted by microsomal epoxide hydrolase-catalyzed hydration predominantly (>95%) at the R-center (C-5 position, see Figure 3) to yield the 5S,6S-dihydrodiol (49). In the metabolism of 12-methyl-BA, the 5S,6S-dihydrodiol was also found to be the major enantiomer formed (50) and this stereoselective reaction is similar to the reactions catalyzed by rat liver microsomes prepared with different enzyme inducers (unpublished results). Labeling studies using molecular oxygen-18 indicate that 5R,68-epoxide is the precursor of the 5S,6S-dihydrodiol formed in the metabolism of 12-methyl-BA (51). 

The 8,9- and 10,11-dihydrodiols formed in the metabolism of BA and DMBA respectively are all highly enriched (>90%) in R,R enantiomers (Table III). Labeling experiments using molecular oxygen-18 in the in vitro metabolism of the respective parent compounds and subsequent mass spectral analyses of dihydrodiol metabolites and their acid-catalyzed dehydration products indicated that microsomal epoxide hydrolase-catalyzed hydration reactions occurred exclusively at the nonbenzylic carbons of the metabolically formed epoxide intermediates (unpublished results). These findings indicate that the 8,9- and 10,11-epoxide intermediates, formed in the metabolism of BA and DMBA respectively, contain predominantly the 8R,9S and 10S,11R enantiomer, respectively. These stereoselective epoxidation reactions are relatively insensitive to the cytochrome P-450 isozyme contents of different rat liver microsomal preparations (Table III). 

As with several other functional groups considered earlier, epoxides are most commonly found in alkaloid metabolites rather than the original compound. These epoxides may arise via oxidation of alkenes or aromatic hydrocarbons. Epoxide hydrolase catalyzes hydrolysis of epoxides to the more hydrophilic diol. As seen in Scheme 6, this is usually a stereospecific reaction that always yields a... 

FIGURE 6.9 Examples of epoxide hydrolase-catalyzed epoxide ring opening. 

FIGURE 6.10 Mechanism of epoxide hydrolase-catalyzed hydrolytic opening of an epoxide. 

Fig. 3.3. Major steps in the hydrolase-catalyzed hydrolysis of peptide bonds, taking chymo-trypsin, a serine hydrolase, as the example. Asp102, His57, and Ser195 represent the catalytic triad the NH groups of Ser195 and Gly193 form the oxyanion hole . Steps a-c acylation Steps d-f deacylation. A possible mechanism for peptide bond synthesis by peptidases is represented by the reverse sequence Steps f-a.

The chemical diversity of carboxylic acid esters (R-CO-O-R ) originates in both moieties, i.e., the acyl group (R-CO-) and the alkoxy or aryloxy group (-OR7). Thus, the acyl group can be made up of aliphatic or aromatic carboxylic acids, carbamic acids, or carbonic acids, and the -OR7 moiety may be derived from an alcohol, an enol, or a phenol. When a thiol is involved, a thioester R-CO-S-R7 is formed. The model substrates to be discussed in Sect. 7.3 will, thus, be classified according to the chemical nature of the -OR7 (or -SR7) moiety, i.e., the alcohol, phenol, or thiol that is the first product to be released during the hydrolase-catalyzed reaction (see Chapt. 3). Diesters represent substrates of special interest and will be presented separately. 

A variety of hydrolases catalyze the hydrolysis of acetylsalicylic acid. In humans, high activities have been seen with membrane-bound and cytosolic carboxylesterases (EC 3.1.1.1), plasma cholinesterase (EC 3.1.1.8), and red blood cell arylesterases (EC 3.1.1.2), whereas nonenzymatic hydrolysis appears to contribute to a small percentage of the total salicylic acid formed [76a] [82], A solution of serum albumin also displayed weak hydrolytic activity toward the drug, but, under the conditions of the study, binding to serum albumin decreased chemical hydrolysis at 37° and pH 7.4 from tm 12 1 h when unbound to 27 3 h for the fully bound drug [83], In contrast, binding to serum albumin increased by >50% the rate of carboxylesterase-catalyzed hydrolysis, as seen in buffers containing the hydrolase with or without albumin. It has been postulated that either bound acetylsalicylic acid is more susceptible to enzyme hydrolysis, or the protein directly activates the enzyme. 

Several drugs, in particular neuropharmacological agents, feature a car-boxylate group esterified to an aminoalkyl moiety. As a rule, such lipophilic compounds are good substrates for hydrolases, and their duration of action is influenced by their rate of hydrolysis (see also Sect. 7.3.4). A simple example is that of procaine (7.56), which is rapidly inactivated by hydrolysis [41] [76a], Various hydrolases catalyze the reaction, in particular plasma cholinesterase and cellular carboxylesterases. As often reported, atropine and scopolamine are rapidly hydrolyzed by plasma carboxylesterases in rabbits (with very large differences between individual animals), but are stable in human plasma [1] [75] [76a] [110]. 

Fig. 8.22. 2-[(Acyloxy)methyl]benzamides (8.187) as double prodrugs of active amines. Activation is by cyclization-elimination in a two-step sequence, namely hydrolase-catalyzed hydrolysis of the carboxylate moiety followed by an intramolecular nucleophilic substitution with...

Fig. 10.8. Simplified and partial metabolic scheme of benzene. Cytochrome P450 mediated oxidation (Reaction a) yields benzene oxide (10.1), which produces phenol (10.14) by isomerization (Reaction c) and 1,2-dihydro-1,2-dihydroxybenzene (10.13) by epoxide hydrolase catalyzed hydration (Reaction d). Direct formation of phenol also occurs (Reaction b). Phenol...

W. Levin, D. P. Michaud, P. E. Thomas, D. M. Jerina, Distinct Rat Hepatic Microsomal Epoxide Hydrolases Catalyze the Hydration of Cholesterol 5,6a-Oxide and Certain Xenobiotic Alkene and Arene Oxides , Arch. Biochem. Biophys. 1983, 220, 485 - 494. 

G. Bellucci, C. Chiappe, F. Marioni, M. Benetti, Regio- and Enantioselectivity of the Cytosolic Epoxide Hydrolase-Catalysed Hydrolysis of Racemic Monosubstituted Alkyloxiranes ,./. Chem. Soc., Perkin Trans. 1 1991, 361 - 363 G. Bellucci, C. Chiappe, L. Conti, F. Marioni, G. Pierini, Substrate Enantioselection in the Microsomal Epoxide Hydrolase Catalyzed Hydrolysis of Monosubstituted Oxiranes. Effects of Branching of Alkyl Chains ,./. Org. Chem. 1989, 54, 5978 - 5983. 

D. Wistuba, V. Schurig, Enantio- and Regioselectivity in the Epoxide-Hydrolase-Catalyzed Ring Opening of Simple Aliphatic Oxiranes. Part I , Chirality 1992, 4, 178 - 184. 

G. Bellucci, C. Chiappe, G. Ingrosso, Kinetics and Stereochemistry of the Microsomal Epoxide Hydrolase-Catalyzed Hydrolysis of cw-Stilbene Oxides , Chirality 1994, 6, 577 - 582. 

G. Bellucci, G. Berti, R. Bianchini, P. Cetera, E. Mastrorilli, Stereoselectivity of the Epoxide Hydrolase Catalyzed Hydrolysis of the Stereoisomeric 3-ieri-Buty 1-1,2-epoxycyclohexane. Further Evidence for the Topology of the Enzyme Active Site ,. /. Org. Chem. 1982, 47, 3105 - 3112. 

Epoxide Hydrolase-catalyzed Synthesis of (/ )-3-Benzyloxy-2-methylpropane-l,2-diol... 

Benzyloxy-2-methylpropane-l,2-diol, a desymmetrized form of 2-methylpropane-1,2,3-triol with its terminal hydroxy being protected as a benzyl ether, was prepared using the B. subtilis epoxide hydrolase-catalyzed enantioselective hydrolysis of the racemic benzyloxymethyl-l-methyloxirane readily available from methallyl chloride and benzyl alcohol. The preparation of the racemic epoxide, a key intermediate, was described in Procedures 1 and 2 (Sections 5.6.1 and 5.6.2), its overall yield being 78 %. The combined yield of enantiomerically pure (7 )-3-benzyloxy-2-methylpropane-l,2-diol was 74 % from ( )-benzyloxymethyl-l-methyloxirane, as described in Procedures 3-5 (Sections 5.6.3 and 5.6.5), with the overall procedures leading to the biocatalytic dihydroxylation of benzyl methallyl ether . 

Fujino, A., Asano, M., Yamaguchi, H., Shirasaka, N., Sakoda, A., Ikunaka, M., Obata, R., Nishiyama, S. and Sugai, T., Bacillus subtilis epoxide hydrolase-catalyzed preparation of enan-tiopure 2-methylpropane-l,2,3-triol monobenzyl ether and its application to expeditious synthesis of (R)-hicalutamide. Tetrahedron Lett., 2007, 48, 979. 

Hydrolases catalyze the hydrolytic cleavage of C-0, C-N, C-C, and some other bonds including phosphoric anhydride bonds. They possess several attractive features, such as broad substrate selectivity and high stereospecificity. This has made them a popular choice for the conduction of many biotransformafions as well as a powerful addition to the organic chemistry toolbox. Hydrolases also often catalyze several related reactions, such as condensations and alcoholysis. 

Class 3 Hydrolases (catalyze bond cleavage by hydrolysis)... 

This enzyme [EC 3.4.19.1], also known as acylamino-acid releasing enzyme and A-acylpeptide hydrolase, catalyzes the hydrolysis of an acylaminoacyl-peptide to generate an acylamino acid and the free peptide. Catalysis is most... 

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