High-potential iron proteins function

Nonrepetitive but well-defined structures of this type form many important features of enzyme active sites. In some cases, a particular arrangement of coil structure providing a specific type of functional site recurs in several functionally related proteins. The peptide loop that binds iron-sulfur clusters in both ferredoxin and high potential iron protein is one example. Another is the central loop portion of the E—F hand structure that binds a calcium ion in several calcium-binding proteins, including calmodulin, carp parvalbumin, troponin C, and the intestinal calcium-binding protein. This loop, shown in Figure 6.26, connects two short a-helices. The calcium ion nestles into the pocket formed by this structure. 

High-potential iron proteins, 45 313-314, 344 cluster stability, 45 324-332 function, 45 315-316 residues, 45 322-344 structure and, 45 317-322 redox properties, 45 333-344 solvent accessibility, 45 330, 332-333 source and function, 45 314-316 structure, 45 316-322 hydrogen bonding and, 45 321-322 intermolecular aggregation, 45 322 primary, 45 317-318 secondary and tertiary, 45 318-321... 

The functions of the heme is uncertain. The soluble mammalian succinate dehydrogenase resembles closely that of E. coli and contains three Fe-S centers binuclear SI of E° 0 V, and tetranuclear S2 and S3 of -0.25 to -0.40 and + 0.065 V, respectively. Center S3 appears to operate between the -2 and -1 states of Eq. 16-17 just as does the cluster in the Chromatium high potential iron protein. The function of the very low potential S2 is not certain, but the following sequence of electron transport involving SI and S3 and the bound ubiquinone QD-S66 has been proposed (Eq. 18-4). 

Other biomimetic reactions are based on the catalytic properties of metal ions. Many enzymes require metal ions that function, in one way or another, in oxidation-reduction processes. The wide range of such metal-ion reactions precludes mentioning more than a few in addition to the iron-porphyrin class, and in addition to chlorophyll, a number of enzymes require cobalamin as cofactor ferridoxin and high-potential iron proteins require iron-sulfur clusters, and nitrog-... 

STRUCTURE-FUNCTION CORRELATIONS IN HIGH-POTENTIAL IRON PROTEINS... 

Iron-sulfur proteins occur in animal, plant, and bacterial cells. The proteins are characterized by the presence of 1-0, 2-2, 4rA, 6-6, or 8-8 atoms of iroursulfide. Only the structure of clostridial rubredoxin, a 1-0 protein, is knoum. It contains iron ligated to four sulfur atoms of cysteine residues of the polypeptide. With the exception of the ""high potential iron protein, all the proteins show unexpectedly low redox potentials and function in biological oxidationr-reduc-tion reactions. 

Pereira MM, Carita JN, Teixeira M. 1999. Membrane-bound electron transfer chain of the ther-mohalophilic bacterium Rhodothermus marinus Characterization of the iron- sulfur centers from the dehydrogenases and investigation of the high-potential iron- sulfur protein function by in vitro reconstitution of the respiratory chain. Biochemistry 38 1276. 

Three alternative mechanisms were proposed based only on the thermodynamic data (403). All of these assumed distinct functions for each flavin and interaction between the flavins. They also assumed that electrons would be transferred to cytochrome P-450 one at a time this has been shown to be the case with cytochromes P-450 that receive electoons from iron-sulfur proteins rather than from the flavoprotein directly (or through the indirect mediation of lipid) (405, 406). One of these mechanisms (403) is shown below. It seems to fit best with the kinetic data determined for the lipase-solubilized reductase (345, 398). In this scheme, SH is a hydroxylatable substrate and SOH its hydroxylated product, and Fli and FU are the high potential and low potential flavins, respectively. 

The be complexes from mitochondria, chloroplasts, and bacteria all contain three catalytic subunits harboring the four redox centers cytochrome b, the high-potential cytochrome C or /, and the Rieske iron sulfur protein. These subunits are required and sufficient to support electron transport since most bacterial bci complexes only consist of these three subunits. However, some bacterial bc complexes contain a fourth subunit with yet unknown function. Mitochondrial bc complexes contain in addition to the three catalytic subunits 7-8 subunits without redox centers two large core proteins which are peripherally located and which are members of the family of matrix proeessing peptidases (MPP), and 5-6 small subunits. In cytochrome complexes, cytochrome b is split into cytochrome b(, and subunit IV containing the C-terminal part of cytochrome b in addition, 3 small hydrophobic subimits are present [18]. 

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