Genomic data mining

Ellis LB, Hou BK, Kang W, Wackett LP. The University of Minnesota Bioca-talysis/Biodegradation Database post-genomic data mining. Nucleic Acids Res 2003 31 262-5. 

That bacterial resistance predates the era of clinical use of antibiotics by several hundred millions of years is the recent result of genomic sequence data mining from antibiotic-producing microorganisms. These are supposed to be the inventors of antibiotic resistance genes which they had developed to protect themselves from the lethal action of their own antibiotics [4]. 

Glusman G., Bahar A., Sharon D., Pilpel Y., et al. (2000). The olfactory receptor gene superfamily data mining, classification, and nomenclature. Mamm Genome 11, 1016-1023. 

KING, R.D., KARWATH, A., CLARE, A., DEHASPE, L., Accurate prediction of protein functional class from sequence in Mycobacterium tuberculosis and Escherichia coli genomes using data mining, Yeast, 2000,17, 283-293. 

SciNova Informatics, an Indian company, has developed a data mining product Prometheus targeted towards genomics, proteomics and small molecule research In Life Sciences. 

SAM Stanford University Supervised learning software for genomic expression data mining (http //www-stat.stanford.edu/ tibs/SAM/)... 

Verducci JS, Melfi VF, Lin S, Wang Z, Roy S, Sen CK (2006) Microarray analysis of gene expression considerations in data mining and statistical treatment. Physiol Genomics 25 355-363... 

These new omics technologies will also enable us to efficiently identify novel compounds of value to both the Agrochemical and Pharmaceutical industries. It is of crucial importance that the data that results from high throughput analyses of the genome, transcriptome, proteome and metabolome of crop plants and foeir relatives is archived in an appropriately structured and indexed manner. This will enable it to be fully integrated and data-mined over an extensive period as our ability to formulate increasingly sophisticated queries on these data sets develops. 

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