Fluorophors

Using guest fluorophores, they show that the adsorption energy increases linearly with the alkyl chain length as... 

Bhawalkar J D, Swiatkiewicz J, Pan S J, Samarabandu J K, Liou W S, He G S, Berezney R, Cheng P C and Prasad P N 1996 Three-dimensional laser scanning two-photon fluorescence confocal microscopy of polymer materials using a new, efficient upconverting fluorophore Scanning 18 562-6... 

Carlsson Kand Liljeborg A 1997 Confocal fluorescence microscopy using spectral and lifetime information to simultaneously record four fluorophores with high channel separation J. Microsc. 185 37-46... 

Mais S, Tittel J, Basche T and Brauchle C 1997 Terrylenediimide a novel fluorophore for single-molecule spectroscopy and microscopy from 1.4 K to room temperature J. Chem. Phys. A 101 8435-40... 

Warshaw D M, Hayes E, Gaffney D, Lauzon A-M, Wu J, Kennedy G, Trybus K, Lowey S and Berger C 1998 Myosin conformational states determined by single fluorophore polarization Proc. Natl Acad. Sc/. USA 95 8034-9... 

Tokunaga M, Kitamura K, Saito K, Iwane A H and Yanagida T 1997 Single molecule imaging of fluorophores and enzymatic reactions achieved by objective-type total internal reflection fluorescence microscopy Biochem. Biophys. Res. Commun. 235 47-53... 

C7>th e antigen, and I an indicator molecule such as an enzyme, fluorophore, or radioisotope. 

Excitation and emission wavelengths are for the unconjugated fluorophore. Wavelengths for conjugates may vary according to the composition of the conjugate. 

As the result of high specificity and sensitivity, nucleic acid probes are in direct competition with immunoassay for the analytes of some types of clinical analytes, such as infectious disease testing. Assays are being developed, however, that combine both probe and immunoassay technology. In such hybrid probe—immunoassays, the immunoassay portion detects and amplifies the specific binding of the probe to a nucleic acid. Either the probe per se or probe labeled with a specific compound is detected by the antibody, which in turn is labeled with an enzyme or fluorophore that serves as the basis for detection. 

In time-resolved fluorescence, rare earths are frequently used as fluorescent labels. The fluorophores have large Stokes shifts, ie, shifts of the emitted light to a higher wavelength relative to the absorption wavelength, and comparatively long decay times, approximately 0.5 ms. This simplifies the optical... 

Nevertheless, quantification is possible, a good example being the evaluation of the composition of chromatographic separations adsorbed onto glass, alumina, polyethylene, or paper. When compared with known standards, the presence of only a few nanograms of a strong fluorophore may be quantified to better than 10%. 

Structure of GFP and its chromophore. To study the chro-mophore of GFP, a sample of GFP was denatured by heating it at 90°C. It was digested with papain, and then a peptide containing the fluorophore was isolated and purified from the digested mixture. The structural study of the peptide has indicated that the chromophore of GFP is an imidazolone derivative shown below (Shimomura, 1979). This chromophore structure was confirmed later by Cody etal. (1993) in a hexapeptide isolated from GFP. It is intriguing that the structure of the GFP chromophore is a part of the structure of coelenterazine. 

Nitroxides have the property of quenching fluorescence. Thus radical trapping with nitroxides containing fluorophores (e.g. 114) can be monitored by observing the appearance of fluorescence.511015 The method is highly sensitive and has been applied to quantitatively determine radical yields in PLP experiments (Section... 

Jablonski (48-49) developed a theory in 1935 in which he presented the now standard Jablonski diagram" of singlet and triplet state energy levels that is used to explain excitation and emission processes in luminescence. He also related the fluorescence lifetimes of the perpendicular and parallel polarization components of emission to the fluorophore emission lifetime and rate of rotation. In the same year, Szymanowski (50) measured apparent lifetimes for the perpendicular and parallel polarization components of fluorescein in viscous solutions with a phase fluorometer. It was shown later by Spencer and Weber (51) that phase shift methods do not give correct values for polarized lifetimes because the theory does not include the dependence on modulation frequency. 

By using phase sensitive detection, the detector phase angle can be adjusted to be exactly out of phase with the phase-delayed emission from any single fluorophore, suppressing its contribution to the total emission signal. Phase sensitive detection, coupled with... 

Membrane depolarization can be measured by members of a class of fluorophores (commonly referred to as the carbocyanine dyes) which have been designed to partition into the membrane, where their orientation and spectral properties change with changes in the electrochemical gradient across the membrane (18). 3,3 -dipropyl-... 

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