Nitrophenyl ester intermediates

It has seemed desirable to try to detect the postulated acylimidazole intermediate by spectroscopic probing. Acetylimidazole has been shown31 to have an absorbance maximum at 245 nm with an extinction coefficient of 3000. This absorbance should provide a basis for detection of the intermediate. However, in practice the strong absorbances due to the aromatic ester substrate (nitrophenyl caproate) and the product (nitro-phenol(ate)), added to the light scattering from the polymer, have made the spectrophotometric observation of the acylimidazole intermediate unfeasible under the reaction conditions previously described.26... 

The initial evidence for the formation of an acyl-enzyme ester intermediate came from studies of the kinetics with which chymotrypsin hydrolyzed analogs of its normal polypeptide substrates. The enzyme turned out to hydrolyze esters as well as peptides and simpler amides. Of particular interest was the reaction with the ester p-nitrophenyl acetate. This substrate is well suited for kinetic studies because one of the products of its hydrolysis, p-nitrophenol, has a yellow color in aqueous solution, whereas p-nitrophenyl acetate itself is colorless. The change in the absorption spectrum makes it easy to follow the progress of the reaction. When rapid-mixing techniques are used to add the substrate to the enzyme, an initial burst of p-nitrophenol is detected within the first few seconds, before the reaction settles down to a constant rate (fig. 8.8). The amount of p-nitrophe-... 

If k2 > kj, the glycosyl-enzyme intermediate will accumulate, and may be trapped by the rapid denaturation of the enzyme in the presence of (saturating) amounts of substrate. With -glucoside Aj from Asp. wentii and 4-nitrophenyl [ C]-2-deoxy-) -D-irra />jo-hexopyranoside, it was possible to identify the intermediate as a glycosyl ester (acylal) of 2-deoxy-D-arabino-hexose bound to the same aspartate residue that had previously been labeled with the active-site-directed inhibitor conduritol B epoxide and with D-glucal." This constituted an important proof that the carboxylate reacting with the epoxide is directly involved in catalysis. 

Sulfate monoesters can react by dissociative paths, and this is the favored path. Whether such reactions are concerted or involve a very short-lived sulfur trioxide intermediate has been the subject of debate. ° Benkovic and Benkovic reported evidence suggesting that the nucleophile is present (though there is little bond formation) in the transition state for the reaction of amines with p-nitrophenyl sulfate. Alkyl esters of sulfuric or sulfonic acids normally react with C-0 cleavage only when this is disfavored, as in aryl esters, does one see S-0 cleavage. Sulfate diester... 

Nitrophenyl esters of amino acids, which are important for peptide syntheses, have been obtained in a one-pot reaction from TV-protected amino acids, CDI, and /j-nitro-phenol at room temperature however, better yields of these esters could be achieved by use of TV-trifluoroacetylimidazole. In this reaction a mixed anhydride is presumably formed as an intermediate, which then acylates the alcohol component [17]... 

More recently, Kaiser and coworkers reported enantiomeric specificity in the reaction of cyclohexaamylose with 3-carboxy-2,2,5,5-tetramethyl-pyrrolidin-l-oxy m-nitrophenyl ester (1), a spin label useful for identifying enzyme-substrate interactions (Flohr et al., 1971). In this case, the catalytic mechanism is identical to the scheme derived for the reactions of the cycloamyloses with phenyl acetates. In fact, the covalent intermediate, an acyl-cyclohexaamylose, was isolated. Maximal rate constants for appearance of m-nitrophenol at pH 8.62 (fc2), rate constants for hydrolysis of the covalent intermediate (fc3), and substrate binding constants (Kd) for the two enantiomers are presented in Table VIII. Significantly, specificity appears in the rates of acylation (fc2) rather than in either the strength of binding or the rate of deacylation. 

Figure 5.29 pNPDP reacts with amine-containing compounds by its p-nitrophenyl ester group to form amide bonds. After photoactivation of the diazo derivative with UV light, a Wolff rearrangement occurs to a highly reactive ketene intermediate. This group can couple to nucleophiles such as amines. 

The rates of reaction of both enantiomers of amino-acid esters in the presence of (S)-[324] are the same, but with (S)-[323] they are in most cases different. The reactions of L-amino acid esters in the presence of (S)-[323] are faster than those in the presence of (R)-[323] by factors of 9.2 (R = i-Pr), 8.2 (R = C6H5CH2) and 6.0 (R = i-Bu). No difference in rates is observed for L-alanine p-nitrophenyl ester. The results were explained in terms of the formation of diastereomeric tetrahedral intermediates [325] and [326]. The bulk of the group R will determine how much the complex stability of the (D)-complex decreases relative to that of the (L)-complex, which difference is reflected in the activation energy of the rate-determining step. 

Micellar microenvironments may be used for differentiating courses of reaction. Thus, cationic micelles efficiently suppressed the SN1 reaction of 1-bromo-2-phenylpropane (Lapinte and Viout, 1973) and of 3-bromo-3-phenylpropionate (Bunton et al., 1974). Tagaki et al. (1976) found that the facilitated formation of carbanion intermediates changed the course of reaction of p-nitrophenyl esters. 

N-Carbobenzoxy-L-alanine-/>-nitrophenyl ester is a specific substrate for elastase in which the rate-limiting step is deacylation, that is, hydrolysis of the acyl-enzyme intermediate. In 70% methanol over a reasonable temperature range the energy of activation of the turnover reaction, that is, deacylation, is 15.4 kcal mol. In the pH 6-7 region in this cryoprotective solvent, the turnover reacdon can be made negligibly slow at temperatures of -50 C or below. Under such conditions/i-nitro-phenol is released concurrent to acyl enzyme formation in a 1 1 stoichiometry with active enzyme in the presence of excess substrate. In other words, even at low temperatures, the acylation rate is much faster than deacylation and the acyl enzyme will accumulate on the enzyme. The rate of acyl-enzyme formation can be monitored by following the rate of p-nitrophenol release, and thus the concentration of trapped acyl enzyme may be determined. This calculadon has been carried out and... 

The presence of a covalent acyl-enzyme intermediate in the catalytic reaction of the serine proteases made this class of enzymes an attractive candidate for the initial attempt at using subzero temperatures to study an enzymatic mechanism. Elastase was chosen because it is easy to crystallize, diffracts to high resolution, has an active site which is accessible to small molecules diffusing through the crystal lattice, and is stable in high concentrations of cryoprotective solvents. The strategy used in the elastase experiment was to first determine in solution the exact conditions of temperature, organic solvent, and proton activity needed to stabilize an acyl-enzyme intermediate for sufficient time for X-ray data collection, and then to prepare the complex in the preformed, cooled crystal. Solution studies were carried out in the laboratory of Professor A. L. Fink, and were summarized in Section II,A,3. Briefly, it was shown that the chromophoric substrate -carbobenzoxy-L-alanyl-/>-nitrophenyl ester would react with elastase in both solution and in crystals in 70 30 methanol-water at pH 5.2 to form a productive covalent complex. These... 

Unfortunately, the size of the crystallographic problem presented by elastase coupled with the relatively short lifedme of the acyl-enzyme indicated that higher resolution X-ray data would be difficult to obtain without use of much lower temperatures or multidetector techniques to increase the rate of data acquisition. However, it was observed that the acyl-enzyme stability was a consequence of the known kinetic parameters for elastase action on ester substrates. Hydrolysis of esters by the enzyme involves both the formation and breakdown of the covalent intermediate, and even in alcohol-water mixtures at subzero temperatures the rate-limidng step is deacylation. It is this step which is most seriously affected by temperature, allowing the acyl-enzyme to accumulate relatively rapidly at — 55°C but to break down very slowly. Amide substrates display different kinetic behavior the slow step is acylation itself. It was predicted that use of a />-nitrophenyl amid substrate would give the structure of the pre-acyl-enzyme Michaelis complex or even the putadve tetrahedral intermediate (Alber et ai, 1976), but this experiment has not yet been carried out. Instead, over the following 7 years, attention shifted to the smaller enzyme bovine pancreatic ribonuclease A. 

Histidine residues are efficient nucleophiles in aqueous solution at pH 7, much more so than lysines, and this is the basis for the site-selective functionalization of lysine residues in folded polypeptides and proteins [24, 25]. p-Nitrophenyl esters react with His residues in a two-step reaction to form an acyl intermediate under the release of p-nitrophenol followed by the reaction of the intermediate with the most potent nucleophile in solution to form the reaction product. In aqueous solution the reaction product is the carboxylic acid since the hydroxide ion is the most efficient nucleophile at pH 7. If there is an alcohol present the reaction product will be an ester and the overall reaction is a transesterification reaction. 

Designed histidine-based four-helix bundle proteins have been shown to catalyze the reactions ofp-nitrophenyl esters [13]. The reactivity of histidine is due to its imidazoyl side chain that reacts with active esters in a two-step reaction. In the first and rate-limiting step the imidazoyl residue reacts with the ester to form an acyl intermediate under the release of p-nitrophenol and in the second step the acyl intermediate reacts with the most potent nucleophile to form the reaction products. 

The para-nitro ester 71d generated only 4-nitroaniline (70%) and 4,4 -dinitroazoxybenzene (10%) when it underwent decomposition (Scheme 29). These products could have been derived from either a triplet nitrene or a triplet nitrenium ion precursor. Homolysis of the N—O bond to generate radical intermediates was ruled out because of the nearly quantitative yield of pivalic acid derived from 71d. The pivaloxy radical would have undergone rapid decarboxylation to generate CO2 and the rert-butyl radical under these conditions. Since no rearrangement product was observed, it was tentatively concluded that this ester underwent direct decomposition to 4-nitrophenyl-nitrene without the intermediacy of a nitrenium ion. ... 

A tetracyclic azacyclol (66) has been obtained from the p-nitrophenyl ester of the linear tripeptide prolylphenylalanylproline (81TL3671). However, the tripeptide active ester Phe-Pro-Pro-ONp with an altered sequence did not lead to the cyclol (66). This suggests that in the former reaction the piperazinedione (65) is an intermediate (Scheme 20). 

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