Combined chain reaction

W. Bi and P. J. Stambrook, Site-directed mutagenesis by combined chain reaction, Anal. Biochem. 1998, 256, 137-140. 

After the primary step in a photochemical reaction, the secondary processes may be quite complicated, e.g. when atoms and free radicals are fcrnied. Consequently the quantum yield, i.e. the number of molecules which are caused to react for a single quantum of light absorbed, is only exceptionally equal to exactly unity. E.g. the quantum yield of the decomposition of methyl iodide by u.v. light is only about 10" because some of the free radicals formed re-combine. The quantum yield of the reaction of H2 -f- CI2 is 10 to 10 (and the mixture may explode) because this is a chain reaction. 

This equilibrium has been extensively studied by Bodenstein. Unlike the other halogen-hydrogen reactions, it is not a chain reaction but a second order, bimolecular, combination. 

Polyethylene (Section 6 21) A polymer of ethylene Polymer (Section 6 21) Large molecule formed by the repeti tive combination of many smaller molecules (monomers) Polymerase chain reaction (Section 28 16) A laboratory method for making multiple copies of DNA Polymerization (Section 6 21) Process by which a polymer is prepared The principal processes include free radical cationic coordination and condensation polymerization Polypeptide (Section 27 1) A polymer made up of many (more than eight to ten) amino acid residues Polypropylene (Section 6 21) A polymer of propene Polysaccharide (Sections 25 1 and 25 15) A carbohydrate that yields many monosacchande units on hydrolysis Potential energy (Section 2 18) The energy a system has ex elusive of Its kinetic energy... 

In order for a soHd to bum it must be volatilized, because combustion is almost exclusively a gas-phase phenomenon. In the case of a polymer, this means that decomposition must occur. The decomposition begins in the soHd phase and may continue in the Hquid (melt) and gas phases. Decomposition produces low molecular weight chemical compounds that eventually enter the gas phase. Heat from combustion causes further decomposition and volatilization and, therefore, further combustion. Thus the burning of a soHd is like a chain reaction. For a compound to function as a flame retardant it must intermpt this cycle in some way. There are several mechanistic descriptions by which flame retardants modify flammabiUty. Each flame retardant actually functions by a combination of mechanisms. For example, metal hydroxides such as Al(OH)2 decompose endothermically (thermal quenching) to give water (inert gas dilution). In addition, in cases where up to 60 wt % of Al(OH)2 may be used, such as in polyolefins, the physical dilution effect cannot be ignored. 

Autooxidation. Liquid-phase oxidation of hydrocarbons, alcohols, and aldehydes by oxygen produces chemiluminescence in quantum yields of 10 to 10 ° ein/mol (128—130). Although the efficiency is low, the chemiluminescent reaction is important because it provides an easy tool for study of the kinetics and properties of autooxidation reactions including industrially important processes (128,131). The light is derived from combination of peroxyl radicals (132), which are primarily responsible for the propagation and termination of the autooxidation chain reaction. The chemiluminescent termination step for secondary peroxy radicals is as follows ... 

The peioxy free radicals can abstract hydrogens from other activated methylene groups between double bonds to form additional hydroperoxides and generate additional free radicals like (1). Thus a chain reaction is estabhshed resulting in autoxidation. The free radicals participate in these reactions, and also react with each other resulting in cross-linking by combination. 

The use of agarose as an electrophoretic method is widespread (32—35). An example of its use is in the evaluation and typing of DNA both in forensics (see Forensic chemistry) and to study heritable diseases (36). Agarose electrophoresis is combined with other analytical tools such as Southern blotting, polymerase chain reaction, and fluorescence. The advantages of agarose electrophoresis are that it requires no additives or cross-linkers for polymerization, it is not hazardous, low concentration gels are relatively sturdy, it is inexpensive, and it can be combined with many other analytical methods. 

A combination of ozone oxidation with simultaneous exposure to ultraviolet light seems to produce a self-renewing chain reaction that can significantly reduce the dose of ozone needed to accomphsh oxidation. 

The oxidation of hydrocarbons involves the sequential formation of a number of similar reactions in which various intermediate radicals which are combinations of carbon, hydrogen and oxygen are formed. In the simplest case, the oxidation of medrane, the methyl radical CH3 plays an important part both in direct oxidation to CO(g) and in indirect oxidation duough the formation of higher hydrocarbons such as CaHe before CO is formed. The chain reactions include... 

Oxidation causes rubbers and resins to harden, and also produces colour darkening in resins. The radicals formed in the above chain reaction are highly reactive and very unstable, so they will be rapidly converted to more stable products. For most rubbers and resins, these radicals combine to form cross-links which cause hardening (Fig. 33). 

However, when MAIs are thermolyzed in solution, the role of the cage effect has to be taken into account. The thermolytically formed macroradicals can, due to their size, diffuse only slowly apart from each other. Therefore, the number of combination events will be much higher for MAIs than for low-molecular weight AIBN derivatives. As was shown by Smith [16], the tendency toward radical combination depends significantly on the rigidity and the bulkiness of the chain. Species such as cyclohexyl or diphenylmethyl incorporated into the MAI s main chain lead to the almost quantitative combination of the radicals formed upon thermolysis. In addition, combination chain transfer reactions may... 

Chain reactions begin with the initiation of a reactive intermediate that propagates the chain and concludes with termination when radicals combine. Branching chain reactions can be explosively fast. 

Chain reactions do not continue indefinitely, but in the nature of the reactivity of the free radical or ionic centre they are likely to react readily in ways that will destroy the reactivity. For example, in radical polymerisations two growing molecules may combine to extinguish both radical centres with formation of a chemical bond. Alternatively they may react in a disproportionation reaction to generate end groups in two molecules, one of which is unsaturated. Lastly, active centres may find other molecules to react with, such as solvent or impurity, and in this way the active centre is destroyed and the polymer molecule ceases to grow. 

The easy homolysis of C-Br bond in CBr4 allowed us to conduct the radical chain reaction of CBr4 with 3,3,3-trifluoropropene under common conditions (benzoyl peroxide), although in this case the strong electrophiles are used as reagents (an addend and a monomer), i.e. a very unfavorable combination of polar factors for proceeding the process takes place (ref. 6). 

Bagasra O, Lavi E, Bobroski L, Khafili K, Pestaner JP, Tawadros R, Pomerantz RJ (1996) CeUular reservoirs of HIV-1 in the central nervous system of infected individuals identification by the combination of in situ polymerase chain reaction and immunohistochemistry. Aids 10(6) 573-585... 

Pollen analysis in combination with other techniques is still an effective tool for the authentication of the botanical origin of honey (Persano Oddo et ah, 1995 Von der Ohe et ah, 2004). It can distinguish polyfloral and different types of unifloral honeys (Mateo and Bosch-Reig, 1998). It can also indicate the percentages of different nectar contributions in honey products. A polymerase chain reaction technique and an... 

The use of PbEt4 as an anti-knock agent in petrol depends in part on the ability of the ethyl radicals, generated on its thermal decomposition, to combine with radicals produced in the over-rapid combustion of petroleum hydrocarbons chain reactions which are building up to explosion (knocking) are thus terminated short of this. The complete details of how PbEt4 operates are not known, but there is some evidence that minute Pb02 particles derived from it can also act as chain-stoppers . 

In the case of chain reactions a mere trace of inhibitor can reduce reaction rates by orders of magnitude. Such inhibitors break the chain, perhaps as a result of a reaction in which a relatively nonreactive free radical is formed. Another manner in which an inhibitor may act is by combining with a catalyst and rendering it inoperative. 

Fig. 19.1 Differential displays comparing RNAs from saline (S)-, imipramine (I)- or fluoxetine (F)-treated rats. Total RNA was extracted from hypothalami of animals treated with the different drugs for two months. Autoradiograms of amplified -[35S]-dATP-labeled PCR (polymerase chain reaction) products after electrophoresis in 6% polyacrylamide gels are shown for two different primer combinations that identified one upregulated (arrowhead) and one downregulated (arrow) fragment in the groups treated with antidepressants (from [4] with permission).

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