Cis regulatory elements

Wei, Z. and Jensen, S.T., GAME Detecting cis-regulatory elements using a genetic algorithm, Bioinformatics, 22,1577,2006. 

Toussaint, B., de Sury d Aspremont, R., Delic-Attree, 1., Berchet, V., Elsen, S., Colbeati, A., Dischert, W., Lazzaroni, Y. and Vignais, P. M. (1997) The Rhodobacter capsulatus hupSLC promoter Identification of cis-regulatory elements and of trans-activating factors involved in Hi activation of hupSLC transcription. Mol. Microbiol., 26, 927-37. 

Fang, R.X., Nagy, E, Sivasubramaniam, S., and Chua, N.H. (1989). Multiple cis regulatory elements for maximal expression of the cauliflower mosaic virus 35S promoter in transgenic plants. Plant Cell 1(1) 141-150. 

Histone acetyltransferases also form large complexes that acetylate not only histones but also other nuclear proteins.281-283 The SAGA HAT complex of S. cerevisiae has a molecular mass of 2.0 MDa and contains at least 14 subunits.2833 Large acetylating complexes have also been identified in Tetrahymena, Drosophila, Arabidopsis, and mammalian species.283 Some subunits of these complexes have been identified as previously known transcription factors. Such multiprotein complexes are sometimes described as cis-regulatory elements (CREs).283b/C... 

Lopes, J.M., and Henry, S.A., 1991, Interaction of trans and cis regulatory elements in the INOl promoter of Saccharomyces cerevisiae. Nucleic Acids Res. 19 3987-3994. 

Soltani, B.M., Ehlting, J., Hamberger, B. and Douglas, C.J. (2006) Multiple cis-regulatory elements regulate distinct and complex patterns of developmental and wound-induced expression oi Arahidopsis thaliana 4CL gene family members. Planta, 224,1226-38. 

Gaedigk et al. (20) have demonstrated that there is tissue-specific expression of microsomal HYLl and not a single HYLl transcript and promoter region. Liang et al. (23) identified several potential cis-regulatory elements and found that transcription factor GATA-4 is probably the principal factor regulating liver specific expression. 

Ghislain J, Chamay P (2006) Control of myehnation in Schwann cells A Krox20 Cis-regulatory element integrates Oct6, Bm2 and SoxlO activities. EMBO Rep 7 52-58. 

Web-Based Identification of Evolutionary Conserved DNA cis-Regulatory Elements... 

Corcoran, D. L., Feingold, E., Dominick, J., et al. (2005) Footer a quantitative comparative genomics method for efficient recognition of cis-regulatory elements. Genome Res. 15, 840-847. 

The trans-regulatory factors that mediate the Bmp response are of obvious interest. Although smad proteins are well-known as transducers of the Bmp signal from cytoplasm to nucleus (von Bubnoff and Cho, 2001), they bind weakly to DNA and are thought to require sequence-specific transcription factors for their function. It will thus be informative to examine closely the Msx2 Bmp responsive cis-regulatory element and cognate factors. 

Liu, X. h, et ah, Cis regulatory elements directing tuber-specific and sucrose-inducible expression of a chimeric class 1 patatin promo-... 

Roebuck KA, Rahman A, Lakshminarayanan V, Janakidevi K, Malik AB H2O2 and tumor necrosis factor-a activate intercellular adhesion molecule 1 (ICAM-1) gene transcription through distinct cis-regulatory elements within the ICAM-1 promoter. J Biol Chem 1995 270 ... 

Are there any cis-regulatory elements downstream of the PTB-gene promoter ... 

Casola A, Garofalo RP, FFaeberle FF et al. Multiple cis regulatory elements control RANTES promoter activity in alveolar epithelial cells infected with respiratory syncytial virus. J Virol 2001 ... 

Hu J, Lutz CS, WUusz J, Tian B (2005) Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation. BJSIA 11(10) 1485-1493... 

Warnatz, H.J., Querfurth, R., Guerasimova, A., Cheng, X., Haas, S.A., Hufton, A.L., Manke, T., Vanhecke, D., Nietfeld, W., Vingron, M., Janitz, M., Lehrach, H., and Yaspo, M.L., 2010. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. Nucleic Acids Research. 38 6112-6123. 

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