Chymotrypsin formation

Figure 2 Time-resolved ESI-TOF-MS. (a) Diagram with the experimental design, (b) Chymotrypsin reaction with p-nitrophenyl acetate under single-turnover conditions monitored by time-resolved ESI-TOF-MS. The decay of chymotrypsin and formation of the acetyl-chymotrypsin intermediate is observed over a time course of 45 s. (c) Kinetic analysis of chymotrypsin decay and acetyl-chymotrypsin formation. For both traces the rate constant was 0.1 s . ...

The answer concerns the different kinetic behavior of chymotrypsin toward amide and ester substrates. Substrate A is N-acetyf-L-phenyfalanine p-nitrophenyl amide, rather than N-acetyl-L-phenylalanine p-nitrophenyf ester for which the initial burst activity was described in the text. The burst is observed if the first step of a reaction (in this case, acyl-chymotrypsin formation, together with release of p-nitrophenyl amine) is much faster than the second step (release of N-acetyl-phenylalanine and free chymotrypsin). With the amide substrate, however, the relative rates of the two steps are more nearly equal therefore no burst is observed. 

Fig. 5. Protein folding. The unfolded polypeptide chain coUapses and assembles to form simple stmctural motifs such as -sheets and a-hehces by nucleation-condensation mechanisms involving the formation of hydrogen bonds and van der Waal s interactions. Small proteins (eg, chymotrypsin inhibitor 2) attain their final (tertiary) stmcture in this way. Larger proteins and multiple protein assembhes aggregate by recognition and docking of multiple domains (eg, -barrels, a-helix bundles), often displaying positive cooperativity. Many noncovalent interactions, including hydrogen bonding, van der Waal s and electrostatic interactions, and the hydrophobic effect are exploited to create the final, compact protein assembly. Further stmctural...

Transition-state stabilization in chymotrypsin also involves the side chains of the substrate. The side chain of the departing amine product forms stronger interactions with the enzyme upon formation of the tetrahedral intermediate. When the tetrahedral intermediate breaks down (Figure 16.24d and e), steric repulsion between the product amine group and the carbonyl group of the acyl-enzyme intermediate leads to departure of the amine product. 

Benzamide known as benti romide, is a chymotrypsin substrate of value as a diagnostic acid for assessment of pancreatic function. It is synthesized by amide formation between... 

For many serine and cysteine peptidases catalysis first involves formation of a complex known as an acyl intermediate. An essential residue is required to stabilize this intermediate by helping to form the oxyanion hole. In cathepsin B a glutamine performs this role and sometimes a catalytic tetrad (Gin, Cys, His, Asn) is referred too. In chymotrypsin, a glycine is essential for stabilizing the oxyanion hole. 

The 6-chloromethyl substituent (series 5 and 6) is required for the inactivation of a-chymotrypsin. Nevertheless, there is only a transient inactivation of HLE and thrombin through the formation of a stable acyl-enzyme in spite of the presence of this group as demonstrated by the spontaneous or hydroxylamine-accelerated reactivation of the treated enzymes (Scheme 11.3, pathway b).21 HLE is specifically inhibited when such an alkylating function is absent (series 7), always through the formation of a transient acyl-enzyme (Table 11.2). 

Many enzymes have absolute specificity for a substrate and will not attack the molecules with common structural features. The enzyme aspartase, found in many plants and bacteria, is such an enzyme [57], It catalyzes the formation of L-aspartate by reversible addition of ammonia to the double bond of fumaric acid. Aspartase, however, does not take part in the addition of ammonia to any other unsaturated acid requiring specific optical and geometrical characteristics. At the other end of the spectrum are enzymes which do not have specificity for a given substrate and act on many molecules with similar structural characteristics. A good example is the enzyme chymotrypsin, which catalyzes hydrolysis of many different peptides or polypeptides as well as amides and esters. 

The influence of adsorption on the structure of a -chymotrypsin is shown in Fig. 10, where the circular dichroism (CD) spectrum of the protein in solution is compared with that of the protein adsorbed on Teflon and silica. Because of absorbance in the far UV by the aromatic styrene, it is impossible to obtain reliable CD spectra of proteins adsorbed on PS and PS- (EO)8. The CD spectrum of a protein reflects its composition of secondary structural elements (a -helices, / -sheets). The spectrum of dissolved a-chymotrypsin is indicative of a low content of or-helices and a high content of //-sheets. After adsorption at the silica surface, the CD spectrum is shifted, but the shift is much more pronounced when the protein was adsorbed at the Teflon surface. The shifts are in opposite directions for the hydrophobic and hydrophilic surfaces, respectively. The spectrum of the protein on the hydrophilic surface of silica indicates a decrease in ordered secondary structure, i.e., the polypeptide chain in the protein has an increased random structure and, hence, a larger conformational entropy. Adsorption on the hydrophobic Teflon surface induces the formation of ordered structural elements, notably an increase in the content of O -helices (cfi, the discussion in Sect. 3.1.4). 

In the reaction with PNPA, myristoylhistidine [29] in a cationic micelle rapidly forms acetylimidazole as a fairly stable intermediate which is readily observable at 245 nm. On the other hand, a mixed micelle of [29] and N,N-dimethyl-N-2-hydroxyethylstearylammonium bromide [30] leads to the formation and decay of the intermediate, indicating that the acetyl group is transferred from imidazole to hydroxyl groups (Tagaki et al., 1977 Tagaki et al., 1979). This can be a model of cr-chymotrypsin which catalyses hydrolysis of PNPA (non-specific substrate) by initial acylation of the histidyl imidazole followed by acyl transfer to the seryl hydroxyl group (Kirsh and Hubbard, 1972), as indicated schematically in (12). 

Besides the formation of luminescent silver clusters in fixed cells, likely due to the presence of proteins, fluorescent silver clusters have been synthesized using proteins as templates. In 2008, Pal et al. reported on the use of an enzyme, bovine pancreatic a-chymotrypsin (CHT) as biotemplate during the chemical reduction of... 

Parmar et al have developed a method for resolving racemic mixtures of a variety of natural and nonnatural amino acids using the ethyl ester of the amino acid protected at the amino position hy the formation of a Schiff base with an aromatic aldehyde such as /)-chlorobenzaldehyde. Both chymotrypsin and Lip such as porcine Lip gave good yields of the L-amino acid which precipitates out of solution as the amino acid ester released from the imine is cleaved by the hydrolase. 

The strongest influence of configuration has been observed for Pi -substituted diastereomers of Z-Phe-(aTfm)Ala-Ala-NH2. The crystal structures of both dia-stereomers have been solved, which enables a better interpretation of this rather interesting effect. While the (S,S,S)-diastereomer has been shown to be almost as stable as the Aib-substituted peptide, the (S,R,S)-diastereomer was hydrolyzed very quickly within the same time range. Molecular modeling studies readily support the formation of hydrogen bonds as a possible explanation for this effect [18,54]. With the known crystal structure of the a-chymotrypsin/phenyl boronic... 

Otamiri, M., Adlercreutz, P. and Mattiasson, B. (1992) Complex formation between chymotrypsin and ethyl cellulose as a means to solubilize the enzyme in active form in toluene. Biocatalysis, 6, 291-305. 

Frenkel, K., Chrzan, K., Ryan, C. A., Wiesner, R., Troll, W. (1987). Chymotrypsin-speeifie protease inhibitors deerease H2O2 formation by aetivated human polymorphonuelear leukoeytes. Carcinogenesis, 8, 1207-1212. 

Figure 3. Possible mechanism for (a) formation and (b) breakdown of acyl-enzyme (chymotrypsin) intermediate (3)...

Pallavicini et al. (16) utilized a-chymotrypsin immobilized on chitin to catalyze plastein formation from leaf protein hydrolyzates. When analyzed by gel exclusion chromatography, the products were comparable to those produced by soluble enzymes. Modification of Specific Functional Properties... 

Epand, R. M., and I. B. Wilson, Evidence for the formation of hippuryl chymotrypsin during the hydrolysis of hippuric acid esters , J. Biol. Chem., 238,1718-1723 (1963). 

Most enzymes employ a combination of several catalytic strategies to bring about a rate enhancement. A good example of the use of both covalent catalysis and general acid-base catalysis is the reaction catalyzed by chymotrypsin. The first step is cleavage of a peptide bond, which is accompanied by formation of a covalent linkage between a Ser residue on the enzyme and part... 

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