Thymus, calf

Hippel, P.H. von, Wang, K.-Y. Dynamic aspects of native DNA structure kinetics of the formaldehyde reaction with calf thymus DNA. J. Mol. Biol. 61 (1971) 587-613... 

The incorporation of acyclovir triphosphate into calf thymus DNA primer template has been shown to be much more rapid and extensive with HSV-1 DNA polymerase than with vero cell DNA polymerase a. This incorporation of acyclovir ceased after 15 min since the template is chain terminated by the acyclovir incorporation, as there is no 3 -hydroxyl group on which to continue elongation. The viral DNA polymerase is also inactivated by tight binding to the terminated template. 

Cytosine was isolated from hydrolysis of calf thymus in 1894 and by 1903 its structure was known and it had been synthesized from 2-ethylthiopyrimidin-4(3H)-one. The acid hydrolysis of ribonucleic acid gives nucleotides, among which are two cytidylic acids, 2 -and 3 -phosphates of cytidine further hydrolysis gives cytidine itself, i.e. the 1-/3-D-ribofuranoside of cytosine, and thence cytosine. The deoxyribonucleic acids likewise yield deoxyribonucleotides, including cytosine deoxyribose-5 -phosphate, from which the phosphate may be removed to give cytosine deoxyriboside and thence cytosine. 

In this work, simple (single-use) biosensors with a layer double stranded (ds) calf thymus DNA attached to the surface of screen-printed carbon electrode assembly have been prepared. The sensor efficiency was significantly improved using nanostructured films like carbon nanotubes, hydroxyapatite and montmorillonite in the polyvinylalcohol matrix. 

FIGURE 3-17 Adsorptive stripping potentiogranis for 0.5 ppm calf-thymus DNA following different adsorption times of 1-150 s (curves a-f) (Reproduced with permission from reference 38.)... 

In another series of experiments, a novel approach to the determination of nucleotide sequence was adopted by A. S. Jones, Stacey, and their co-workers. For example, when calf thymus DNA was treated with mercaptoacetic acid in the presence of zinc chloride and anhydrous sodium sulfate, it yielded aldehydo-apurinic acid bis(carboxymethyl) dithioacetal. When degraded with dilute alkali, this afforded dialyzable fragments, which were separated into at least 20 components. Some were identified, including mono-, di-, and tri-nucleotides, thereby revealing that DNA contain regions of at least three linked pyrimidine nucleotides. The same procedure was applied to the DNA isolated from M. phlei ... 

The Nucleotide Sequence in Deoxypentosenucleic Acids. Part II. The Alkaline Degradation of Calf-thymus aldehydo Apurinic Acid Di(carboxymethyl) Dithioacetal, A. S. Jones, D. S. Letham, and M. Stacey, J. Chem. Soc., (1956) 2579-2583. 

Small-angle X-ray scattering (SAXS), circular dichroism (CD), and UV spectroscopy at different temperatures were used to investigate the nature of calf-thymus DNA in aqueous solution, in the presence of [Me Sn] " (n = 1-3) species. The results demonstrate that the [MeSn(IV)] moiety does not influence the structure and conformation of the DNA double helix, and does not degrade DNA, as indicated by agarose gel electrophoresis. Inter alia, the radii of gyration, Rg, of the cross section of native calf-thymus DNA, determined by SAXS in aqueous solution in the presence of [Me Sn] " (n = 1-3) species are constant and independent of the nature and concentration of the [Me Sn] species. 

The local structure of these complexes and adducts of calf-thymus DNA with different organotin(IV) moieties were determined by means of EXAFS. The... 

The sensitivity of the fluorescence methods varies considerably with the instrument used. Advances in modern instrumentation and the power of today s computers allow for a much improved sensitivity. Using commercially available instruments and modern computers equipped with appropriate software, detection limits down to 10 pg of calf thymus DNA can be achieved using ethidium bromide. (We have achieved such levels using several Perkin-Elmer MPF66 Instruments at various locations.)... 

Double-stranded DNA (calf thymus) Single-stranded DNA Heat-denatured DNA Closed circular DNA Ribosomal RNA (rat liver)... 

The tveak and reversible binding of these complexes to calf-thymus DNA (ct DNA) suggests a dominant electrostatic mode of interaction nevertheless, relevant conformational distortions of the double helix are caused [50]. A multinuclear NMR study of the reactivity of [Au(en)Cl2]Cl and [Au(en)2]Cl3 vith guanosine 5 -monopho-sphate (5 -GMP) reveals that in an aqueous solution only [Au(en)Cl2]Cl binds very weakly to 5 -GMP via N(7) to give a 1 1 adduct [48]. 

Messori, L, Orioli, P., Tempi, C. and Marcon, G. (2001) Interactions of selected gold(III) complexes with calf thymus DNA. Biochemical and Biophysical Research Communications, 281, 352. 

Identification of proteins that bind to Z-DNA added one further step to the establishment of the presence of Z-DNA in vivo and its possible biological role. Herbert and Rich [22] demonstrated an in vitro assay system where one type of double-stranded RNA adenosine deaminase, called DRAD-binding Z-DNA. There are evidences that topoisomerase II from Drosophila, hiunan and calf thymus recognizes a number of DNA shapes, including Z-DNA [34,35]. Bloomfield and coworkers [36] have found that the condensation of plasmids is enhanced by Z-DNA conformation in d(CG)n repeats. The information related to B-Z transition [31], the effect of ligands on it [28,29] and X-ray crystal structure data [37,38] appear to suggest that the possible biological role of this polymorphic form of DNA will be soon established. 

All earlier studies [155-158] reported the complexation of berberine with calf thymus DNA and suggested by a mechanism of intercalation. Maiti and coworkers [159-162] demonstrated first the base- and sequence-specificity of berberine from studies with several naturally occurring DNAs (Clostridium perfringenes, cholera bacteriophage 02, calf thymus, Escherichia coli, Micrococcus lysodeikticus) and synthetic DNAs ((poly(dG-dC) poly(dG-dC), poly(dG)-poly(dC), poly(dA-dT) poly(dA-dT), poly(dA)-poly(dT)) using various physicochemical techniques. Several aspects of the interaction were reported ... 

Fig. 7 Chemical structure of berberine with atom numbering and proton labels. NMR spectra of berberine titrated with increasing concentrations of calf thymus DNA at 298 K (a) and at 350 K (b). Reprinted from [165] with permission from the publisher...

Thus, thymine-tyrosine, thymine-aliphatic amino acid and cytosine-tyrosine links have been identified in isolated calf thymus chromatin subjected to 7-irradiation, or treated with metal ions and H2O2 (Dizdaroglu, 1991 Nackerdien et al., 1991). 

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